Paludihabitans sp. MB14-C6: RBG61_06075
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Entry
RBG61_06075 CDS
T09321
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm02020
Two-component system
palm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RBG61_06075
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RBG61_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palm03021
]
RBG61_06075
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
palm02035
]
RBG61_06075
Transcription machinery [BR:
palm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RBG61_06075
Bacterial motility proteins [BR:
palm02035
]
Flagellar system
Flagellar assembly proteins
Stator
RBG61_06075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_Crp_2
HTH_28
Phage_terminase
GerE
HTH_10
HTH_5
HTH_37
HTH_Tnp_ISL3
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
WMJ24231
LinkDB
All DBs
Position
complement(1262519..1263298)
Genome browser
AA seq
259 aa
AA seq
DB search
MQALKAETLPIQHYDLWKKYEDTQSVDIRNTLITLYSPLVRQIALRTTGSYQYVNFLDDL
INEGIIALLDAIEKFDLSKNVKFETFASIKIKGAMIDFIRRQDCFPRRVKRMAKVLAEAE
SDLCNKLEHHPSQQELADHLNMTVNELGKLQLEVYSLNVYSFEQVVYESNAENTLAELFT
SHSDSPEQRLANQELATTVANAIESLKENEKLVIALHYKEQLKIKDIANILNISDSRVSQ
IHSNALKKLKAVIEQYITN
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgctaaaggctgaaactttaccaattcaacattatgacttatggaaaaaatac
gaggatacgcagagcgtagatatccgtaatacgttaatcactctatatagccctttggtt
cgtcaaattgcattaagaactacgggaagttaccaatatgtaaacttcttagatgattta
atcaatgaaggcattattgctttattagatgcaatagaaaaatttgatttatcgaaaaat
gttaaatttgaaacatttgcttccataaaaataaaaggagccatgattgactttattcga
agacaagactgctttcctcgaagagtgaaaagaatggcgaaagtgcttgcggaagcagaa
tccgatttatgcaacaagcttgagcatcatccctctcaacaggaacttgcagatcatttg
aatatgactgttaatgagttgggtaagctgcagcttgaagtgtattctttaaatgtgtat
tcttttgagcaagtagtttatgaaagtaatgcagaaaatacacttgctgaactttttacc
tctcattcggatagtcctgaacaacgattagccaatcaagaattagcaacaaccgttgcg
aatgcaatagaatcattaaaagaaaatgagaagttagttattgcattacactataaagag
caactaaagattaaagatattgcaaatattctaaatatcagtgattcccgtgtatctcaa
attcattcaaacgcattaaaaaagctaaaagcggttattgaacagtatattacgaactag
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