Paludihabitans sp. MB14-C6: RBG61_11595
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Entry
RBG61_11595 CDS
T09321
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
palm
Paludihabitans sp. MB14-C6
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_11595
Enzymes [BR:
palm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBG61_11595
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RBG61_11595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
ResIII
DUF87
AAA_19
UvrD-helicase
cobW
AAA_22
AAA_24
AAA_14
MobB
Dna2
DUF7364
RNA_helicase
SLFN-g3_helicase
ABC_tran
AAA_16
NACHT
ATPase_2
Bac_DnaA
AAA_7
TrwB_AAD_bind
DUF3638
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WMJ22625
LinkDB
All DBs
Position
2428107..2431457
Genome browser
AA seq
1116 aa
AA seq
DB search
MLQFILGASGTGKTTLVHEMIQQLSENEKNKIMLIVPEQFTYETEKSLFQRLGPNQFMRV
HVTSFTRFASEVFKLYGGCAGEYASDPAKTILMDIAINEVKDELEIYQKAARSKTFANTM
IDTVTELKNAGVTPNTLVDTSKQLESNHLSQKAKEIALLYSAYDALLYTTYLDPLDDITR
ATKKLQGTNFFDGYTVFFDEFKGFTANEYDLIKMIFATAKNTYVSLCLELIRANDSDISV
FQSVKETYEKLKRFCSEGNVTIKPSIQMQEQKRFQNEVLTHLEQNLFSPVIHQYNGTENA
IQATLCKNEYDEVDYTIASIAELVQEKGYRYNDIVIISRDLEGYMSILQVALGKAQIPYY
TDSLSKITTKPLTRFVANAFSCIVNHYKSEDILSLLKCGLTEYSVEEIAELENYIYVWGI
KGKQWFAPFTANPRGYKESFLDEDTECLERVNKLREFVIGHITKLEQATKHATGKQISMA
LIAFLLDMKVKENTERLITSLSLQENLAEEYARIWDILMELINTMAVTIAETIVTPKRYE
QLYSLLCESYNLGSLPQSLDCVIIGSADRIRITDKKAVFVLGVNENVFPLVPSTGGVFTD
KEREQLIALSIEIAPPAKKRVLEERFIAYKTLTSPTKVLYLTARKSDIAGKSMTPSVIFT
QLKKMFQEELIQDTEDFNGLFYCKSKWDAFGYLAKNISEDTELTASIAEVLKKDELYAQK
LDSLDKVYEKKPYRITNHKNAKELFGEKMSISPTRVEGFYQCKFKYFCEHGLRIQPLRKA
ELNPMETGTLIHSVLYNITKQVDLKEHFDEKQIKKMIKEELDLYIEQVMGGADDKSKRFI
YLYNRMRLSIFKIIERLHLELVQSRFSPCDFEYEITNESDITPLELVSQDGTRISVAGKI
DRIDSYINKKGEKYIRIIDYKSGKKVFKLNDVLFGLNFQMLIYLFCIYQNGKGKYENSLP
AGILYMPASEQTPSLARDATEVDTEKAQLEHYRMNGLLLQDEEVLNAMEEDYKGVFIPVS
TKKDGSFTTASFNALVTLKELGNVNKYISKLITNMADELHLGNIEAVPIENTCDYCNYSG
VCGVRPSDAKREYIKYDRQAVLDQMQKQAGEGEQDE
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaatttatactaggtgcaagcggaactggaaaaacaactcttgttcatgaaatg
atccaacaactaagcgaaaatgaaaaaaataaaattatgttaatcgttcccgagcaattt
acctatgaaacggaaaaaagcttatttcaacgtttagggccaaatcagtttatgcgtgtt
catgtaacaagctttactcggtttgcaagcgaggtattcaagctatatggtggctgtgca
ggtgaatatgcatcagatcctgctaaaacaattttgatggacattgcaatcaatgaagta
aaggacgagcttgaaatctatcaaaaggctgcaagaagcaaaacctttgcaaacacaatg
atagatactgtaacagagcttaaaaatgcaggagttactccaaacacgttagtcgatact
tcaaaacaactcgaaagcaaccatttaagccaaaaagcaaaagaaatcgccttattatac
agtgcatacgatgctttactatatactacatatcttgatccgcttgatgatattacaaga
gcaacaaagaaattacaaggaacaaatttttttgatggttataccgttttctttgatgag
tttaagggatttactgcaaatgaatatgatttaattaaaatgatatttgcaaccgcaaaa
aatacttatgtttccctatgtttagaattaattcgagccaacgatagtgatattagtgta
ttccaaagtgtgaaagaaacttatgaaaaattaaaacggttttgcagtgaaggaaatgta
acaataaaaccatctattcagatgcaagaacaaaagcgttttcaaaatgaagttctgact
catttagaacaaaacttattcagccctgttattcatcagtataacggaacagaaaatgca
attcaggctactctttgtaagaacgaatatgatgaggtggattatacgatcgcatctatt
gctgaattggtgcaagaaaaaggctatcgatataatgatattgtaataatctcgcgtgat
ttagaaggctatatgtctattttacaagtagcacttggtaaagcccaaataccatattat
acggattcattatctaaaataacaacgaagccattaactcgttttgttgctaacgcattc
agttgtattgtaaatcattataaaagtgaagatatattatcgctactgaaatgtggatta
accgaatatagcgttgaagaaatagctgagcttgaaaattatatatatgtatggggaatt
aagggtaaacaatggtttgcaccatttacagcgaatccaagaggctataaagaaagcttt
ttagacgaagacaccgaatgcttagagcgggttaataagctgcgagagtttgtaataggt
catattacaaagctagaacaagcaacgaaacatgcaactggaaaacaaatcagtatggca
ctaatcgcttttttactggatatgaaagtgaaagagaatacagagcggttgataacgagc
ctttctttgcaagagaatttagcagaagagtatgctcgtatttgggatattttaatggag
cttattaatacaatggctgttaccattgcggaaacaatagtaacgccaaaacgttatgag
cagctttattctttattatgtgaatcttataatcttggctcattgccacaatcattggat
tgcgtaataattggtagtgctgatcgcattcgtataacggataagaaagcagtatttgtt
cttggcgtgaatgaaaacgtatttccacttgtgccaagtacaggtggagtatttaccgat
aaagagcgtgaacaactgattgcgttatcaattgaaattgcaccaccagcaaaaaaacgt
gtattagaagaacgctttattgcttataaaacgttgacatcaccaacaaaagtgctttat
cttactgcaagaaaatcagatattgcgggaaagagtatgacgccatctgtaattttcaca
caattaaaaaagatgtttcaagaagaattgattcaagatacagaagattttaacgggcta
ttttactgcaaatcgaaatgggacgcatttggctatcttgctaaaaatatctctgaagat
actgagcttacggcgtctattgctgaggtattaaaaaaagatgagttgtatgcgcaaaag
cttgactcattagataaagtctatgagaaaaagccatatcgtattaccaatcataaaaat
gccaaagaactttttggcgaaaagatgagcatttctccaactcgtgtcgagggattttat
caatgtaaattcaagtatttttgtgagcatgggttgcgaattcaaccattaagaaaagca
gagctgaatccaatggaaacaggaacgttaattcatagcgttttatacaatattacaaaa
caagtggatttaaaagaacattttgatgaaaagcaaattaaaaagatgataaaagaagag
ttggatttatatattgagcaggttatgggcggagctgacgataaatcaaagcgttttata
tatttatataacagaatgcgattatccatctttaaaattatcgaacgattgcatttagaa
ttggtgcaaagccgcttttccccatgtgattttgaatatgaaatcacaaatgaaagtgat
atcactcctttggaattagtaagtcaagatggaacaagaattagcgttgcaggaaaaatt
gatagaatagatagctatatcaataaaaaaggcgaaaagtatattcgtatcatcgattat
aaatccggcaaaaaagtgtttaagctaaacgatgtattatttggactgaattttcaaatg
ctaatctatcttttttgcatttatcaaaacggtaaaggcaaatatgaaaatagtttgcct
gcaggtatattatacatgccggcaagtgaacaaacaccatcgcttgctcgtgatgcaaca
gaggttgatactgaaaaagcgcagctggagcattaccgcatgaacggactgttgttgcaa
gatgaagaagttttaaatgcgatggaagaggattataaaggcgtatttatccctgtttct
accaaaaaagacggcagctttacaacggctagtttcaacgcattggtaacgttaaaagaa
ttgggtaacgtaaataagtatatcagcaaactgattacgaatatggcagacgaattgcat
ttaggtaatattgaagctgttccaattgaaaatacctgtgattattgcaattattcaggt
gtttgtggagtgcgcccttctgacgctaaaagagaatatattaaatatgatagacaagca
gtattagaccaaatgcaaaaacaagctggagagggggagcaagatgagtaa
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