Pseudoalteromonas aliena: B0W48_01310
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Entry
B0W48_01310 CDS
T04815
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paln
Pseudoalteromonas aliena
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paln03016
]
B0W48_01310
Enzymes [BR:
paln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B0W48_01310
Transfer RNA biogenesis [BR:
paln03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B0W48_01310
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AQP98550
UniProt:
A0A1Q2GU78
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All DBs
Position
285718..286848
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AA seq
376 aa
AA seq
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MQYQLIQTQNQLNTFVEQIQNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE
LSLFDFWQILKDPAVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLGEGNCMGFAL
MVKELLGIEIDKSESRTNWLQRPLTPKQLDYAAADTFHLLPCFELIIERIKAADLFDIVI
NESELIANKRAFQTPDEFLYKDIKNAWQLKPHELAVLKELATWRRNKAIKKNLALNFVLK
EHNMAEIAKRGPSSLNALRQISGVEAIEVNRSGVEILKCIEIAKLIPQEQHPAVLKRLID
FPTYKKVAKDVKQKITKVAKAHNIPDDVMASKKQVNQLISWNWKLTAEQKIKYIKPDLLS
SWRYTYVKDVLKEWDS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcaataccaattgatccaaacacaaaaccagcttaatacgttcgttgagcagatccaa
aataaacccgttttagccatagatactgagtttatgcgtcgccgtacgctgtatcctgaa
gttgcacttattcaggtatacgatggtgagcatcttgcgcttattgatccactggctgag
ttatcattatttgatttttggcaaattttaaaagatcctgctgttttaaaagtattacat
tctccttcagaagacatcgaagtatttcaaaagtacgcagggtttgtacccgccccatta
ttcgatacacaatttgctttgcaattacttggtgaagggaattgcatgggctttgcactg
atggtaaaagagctgctgggcatagaaatagataaaagtgagtctcgcactaattggcta
cagcgtccattaacccctaaacagcttgattatgcagcagctgatacatttcacttatta
ccatgctttgaactaattattgagcgtattaaagcggctgatttatttgacatcgttatc
aacgaaagtgaattaattgcaaataagcgcgcatttcaaacaccagatgaatttttatat
aaagatattaaaaatgcgtggcagcttaaaccgcatgaactagcagtattaaaagagctt
gctacttggcgcagaaataaagccattaaaaagaatttagcacttaattttgtactcaaa
gagcataacatggcggaaatagctaaacgcggtccgtctagtttaaatgcacttagacaa
atatcaggtgttgaagcgattgaagttaatcgctcaggtgtagaaattttaaaatgtatc
gagattgctaagttgataccgcaagagcaacatcctgctgtattaaagcgcttaattgat
tttcctacttataaaaaagtagcaaaagatgttaaacaaaaaattactaaagtagcaaaa
gcgcataatattccagacgatgtgatggcttctaaaaaacaagtcaatcaattgataagt
tggaattggaagttaacagcagagcaaaaaattaaatatataaaacccgacttattgagt
tcttggcgttatacatacgttaaagacgtgctaaaagagtgggacagctaa
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