Pseudoalteromonas aliena: B0W48_05940
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Entry
B0W48_05940 CDS
T04815
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
paln
Pseudoalteromonas aliena
Pathway
paln03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B0W48_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paln03400
]
B0W48_05940
Enzymes [BR:
paln01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B0W48_05940
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B0W48_05940
DNA repair and recombination proteins [BR:
paln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B0W48_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AQP99380
UniProt:
A0A1Q2GWI9
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All DBs
Position
complement(1339061..1339870)
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AA seq
269 aa
AA seq
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MPELPEVEVSRMGITPHVQNQVVTKVNIYNASMRWPVPDDVYQLEGLTVTSIERRAKYLL
LHCQLGSTILHLGMSGNLRVVDKAEPLKKHDHVEFIFGNGKALRLNDPRRFGCCLWQEPG
EVHKLLSKLGPEPLTDDFFAQRVYEQSRNKKVPVKQFIMDNAVVVGVGNIYANESLFKAG
IHPKREAGKVSLKRYQALIPIIKDTLAAAIKQGGTTLKDFAQSDGKPGYFAQELLVYGRK
GKPCMTCESELEEIRLGQRSTIFCSNCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttaccagaggtagaagtgagccgaatggggatcactccccatgtacagaac
caagttgttaccaaggtgaacatttacaatgccagtatgcgttggccagtgcctgatgat
gtttatcaactagaagggttaactgtaacaagcattgaacgacgagctaaatacttactg
ttacattgccaacttggtagtactattttgcatttgggaatgtcgggtaatttacgtgta
gtagataaagctgaaccattaaaaaagcacgaccatgttgagtttatttttggtaatggt
aaggcgctgcgtttaaacgatcctcgtcgttttggttgctgcttatggcaagagccagga
gaggtacacaagctgctttctaagcttggtcctgagccgcttaccgatgatttttttgct
caacgcgtgtacgaacaatcgcgcaataaaaaagtgcccgtaaagcagtttattatggat
aacgctgtggttgttggagtcggtaatatttacgcgaatgaatcactctttaaagccggt
attcatcctaaacgagaggctggcaaagtatcactaaagcgttatcaggcacttatccct
attataaaagacacgcttgctgcggccataaaacaaggtggaacaacgcttaaagatttt
gcacaaagtgatggaaagccaggttactttgctcaagagttattagtttatggacgcaaa
ggaaaaccgtgcatgacgtgtgaaagcgaattagaagaaattagattggggcagcgcagt
actattttttgctcaaactgccaaaagtag
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