Pseudoalteromonas aliena: B0W48_08870
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Entry
B0W48_08870 CDS
T04815
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paln
Pseudoalteromonas aliena
Pathway
paln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0W48_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paln03019
]
B0W48_08870
Enzymes [BR:
paln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0W48_08870
Messenger RNA biogenesis [BR:
paln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0W48_08870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AQP99893
UniProt:
A0A1Q2GXN7
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All DBs
Position
1997743..1999020
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AA seq
425 aa
AA seq
DB search
MTKTHLTDKKFSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKT
LAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGED
YEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMF
DRMPDTSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDK
IKLLLTLIEEEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQSILAQFS
KGELDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQ
YAYNLHEIEEYIEHSIPLSHYDKTALLDDLTQPIIQRKRNYSTGPRNRSNNSGRRPNNSY
QKGRS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttaaccgataaaaagttttcagactttgctatcgcaccggaagtg
gttgccggtttaaccgagaatgggtttgaatattgcacacctattcaagcaaaatgccta
ccttttatttgtgatggacgcgatatcgcgggccaagctcaaactggtacaggcaaaacg
ttggcgtttttaactgccacgtgccatcggttattacaatctagcaaagcacctagtaaa
catccaagagccctgatcatggccccgactcgggagcttgcgattcagatacacaaagat
gctaaaattttagcgccgcactgtaatcttaacttaggtttagtatatggtggcgaagat
tacgaaaaacaacgtgcacaactagaaaaaggcgttgatattttaattggtactacaggt
cgcctaattgatctgtataagcaaggctgttacacccttaatgaaattgaggtagtcgtg
cttgacgaagctgatcgtatgttcgatttaggctttattaaagatattcgctatatgttc
gatcgtatgccagatacatcaaagcgtttaaacttattattttctgccacgctttcatat
cgtgtgcaagaactagcgtttgagcatatgacaaacccagagcacgttcaaattgaacct
gacgttaaaacgggtaaacgtattcaagaagagctatttcatccttcgcaagaagataaa
attaagttgttgttaaccttaattgaagaagaatggccagagaaagcaatcgtgtttgca
aataccaagcacagctgtgaaacagtatatgcgtggttaaagtctgatggccatcgtgtt
ggtatgttaactggtgatgtaaatcagaaaaaacgtcaaagtatattagcgcaatttagt
aaaggcgaattagactttttagtggcaactgacgttgcagcacgtggtttacatattcca
gaagtgagccatgtatttaactttgatttacctgacgattgcgaagattacgtacaccgt
attggtcgtactggccgtgctggtgcatctgggcatgcaattagttttgcgtgtgagcag
tatgcatacaatcttcatgaaatcgaagaatatatagagcacagcattcctttatcgcat
tacgataaaacagcattgttagatgatttaacacagcctattattcaaagaaagcgcaac
tattcaacaggtccacgtaaccgcagtaacaacagcgggcgtcgtccaaataatagttac
caaaaaggacggtcgtaa
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