Pseudoalteromonas aliena: B0W48_16155
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Entry
B0W48_16155 CDS
T04815
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paln
Pseudoalteromonas aliena
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paln03032
]
B0W48_16155
03400 DNA repair and recombination proteins [BR:
paln03400
]
B0W48_16155
Enzymes [BR:
paln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B0W48_16155
DNA replication proteins [BR:
paln03032
]
Prokaryotic type
DNA Topoisomerases
B0W48_16155
DNA repair and recombination proteins [BR:
paln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B0W48_16155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_LysW
Toprim_2
DUF2399
Motif
Other DBs
NCBI-ProteinID:
AQQ01167
UniProt:
A0A1Q2H1D8
LinkDB
All DBs
Position
3620346..3623054
Genome browser
AA seq
902 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSSKNKVPATKTPAEVRKME
PEEKAAYKKQRDYTNLVARMGIDPDQGWEPHYEILPGKEKVVQELQKLAENADQIYLATD
LDREGEAIAWHLQEIIGGEPAKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSES
ELRLEVTKQADKPFKPVNEAQASAAVKSLENAEYKVVNIEEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVAMCREYVTEQFGEKYLPKDP
INYSSKGNAQEAHEAIRPSSVAVLSGHIEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFQLKAKGRVLRFDGWTKVQPAIRKKNEEDQSLPPVTLGETLTLVELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTEVLDKFYADFSTQLTVAKDEPEQGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYSLPPKERCTTTMNLVSGDEAVAADVEDVE
TETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACKGHVVEEGTFKIKGYDGPIIECD
KCGADMELKSGRFGKYFGCNNEECKNTRKLLKSGEAAPPKEDPVHIKELECEKSEAYFVL
RDGAAGIFLAANTFPKSRETRAPKVEELKRFRDRISPKFYYLADAPAQDPDGNLAVVRYS
RKNKSQYVMTEVDGKATGWTAHYEAGKWVEEAKKKAAPKKKPAAKKAPAKAKVKAKAKKE
DE
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatat
ttaggtaacgatttcatcgtaaagtctagtattggacacgtacgagatttacctacttca
ggttcgagcaaaaataaagtgccggcaactaaaacgcctgcagaagttcgtaaaatggaa
ccagaagaaaaagcagcgtataaaaagcaacgagattatactaatttagtcgcgagaatg
gggattgaccctgatcaaggctgggagccgcattacgaaatactgcctggtaaagaaaaa
gttgttcaagaattacaaaagctggcagaaaatgcagaccaaatatatctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaatcattggcggagagcct
gcaaagtataagcgtgtagttttcaacgaaattacaaaaaatgcgattcaacaagcattt
gaaacaccaggcgagctaaataccgacatggtctatgcgcaacaaacgcgtcgtttttta
gatcgtgtggttggctttatggtgtcaccgttactgtgggcaaaggttgctcgtggactc
tcagcaggtcgagttcaatcagttgcagtgcgtttattagttgagcgcgaacgtgaaatt
aaagcgtttatcccagaagaattttgggatattcatgctgatgttaaaaatagtgagtcg
gagttacgtttagaagtaaccaaacaagctgacaagccatttaagccagtaaatgaagct
caggctagcgcagcggttaaaagccttgagaatgccgaatataaagttgttaatattgaa
gaaaaaccaagcaagagccgcccaagtgcgcctctaatcacttcaacaatgcaacaagcg
gcgagcacacgcttaggttatggtgttaagaaaaccatgatgctagcacagcgcttgtac
gaaggcggttatattacctatatgcgtaccgattcaactaatctatcaaaagatgcagtt
gcaatgtgccgtgaatatgtaacagaacaatttggtgaaaaatacttaccaaaagatcca
attaattacagctcaaaaggcaacgcacaagaggcgcatgaagctattcgtccgtcgagt
gtagccgtactttctggccatattgaaggcgttgatgcagatgctaaaaagctttatgag
cttatttggcgtcaatttgtagcgtgtcagatggtaccagcagagtacgatttaactact
ttgactgttgcagcaaacgatttccagctcaaagcaaagggtcgcgtattacgctttgat
ggttggactaaagttcaacctgcaattcgcaaaaagaacgaagaagatcagtcattacca
cctgttacactaggcgaaaccctgacccttgttgaacttgatcctaaacagcattttaca
aaaccacctgcgcgttttagtgaagcgagtttagtaaaagagcttgaaaaacgtggtatt
ggtcgtccttcaacgtacgcatctattatttcaacgattcaagaccgtggttatgtacgc
gtcgaaaatcgtcgtttcttcgctgagaaaatgggtgaaattgttaccgatcgtctagtt
gaaaacttcacagatttaatgaattttgactttaccgctaaaatggaaggtcgactagat
gatatcgcagaaggcgagcgcgtttggaccgaagtacttgataaattttatgctgatttc
tcaacgcaattaacagtcgcaaaagatgaaccagagcaaggcggtatgcgcctcaatgaa
atggttgaaacggatattgaatgcccaacatgtagccgcaaaatgggtatacgtacggca
tcaacaggcgtatttttaggttgtacgggttatagtctaccgcctaaagagcgttgtact
acaacaatgaacttagtgtcaggtgatgaagccgtagcagcagatgttgaagatgttgaa
actgaaacattaatgcagatgaagcgttgtccaatttgcgagacagcaatggactcgtac
ttaatcgatgaaacacgtaaattacatgtttgtggtaataatccagcttgtaaaggtcac
gttgttgaggaaggcacctttaaaattaaaggctatgacggtccaattatcgaatgcgat
aaatgtggtgctgacatggagctaaaatcaggtcgttttggtaagtactttggttgtaat
aatgaagagtgtaaaaatacgcgtaaactactgaaaagtggtgaagcagcgccgccaaaa
gaagaccctgtacatattaaagagcttgaatgtgaaaagtctgaagcgtattttgtatta
cgtgatggcgcagcaggtatatttttagcggccaatacttttcctaagtcacgtgaaacg
cgtgcaccaaaggttgaggaattaaagcgctttagagaccgtatttcacctaaattttat
tatttagccgatgcaccagcacaggatcctgatggcaacttagcggttgttcgttatagc
cgtaaaaataagtcccaatatgtaatgactgaagttgacggtaaagcaactggctggact
gcacattatgaagcgggtaaatgggtagaagaagcaaagaaaaaagcagcaccaaaaaag
aagccagctgctaaaaaagcccctgctaaagcaaaggttaaagcgaaagctaaaaaagaa
gatgaataa
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