Paenibacillus algicola: E6C60_0043
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Entry
E6C60_0043 CDS
T07807
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palo
Paenibacillus algicola
Pathway
palo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E6C60_0043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palo03400
]
E6C60_0043
Enzymes [BR:
palo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E6C60_0043
DNA repair and recombination proteins [BR:
palo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E6C60_0043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_22
DUF1366
Motif
Other DBs
NCBI-ProteinID:
QCT00771
UniProt:
A0A4P8XHK3
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All DBs
Position
40967..44494
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIDVFSEDKDFQSITAGLASGMRDQLISGLTGSSRQVMIAGVMQNQQRPVLVVTHN
MFSAQKIYDDLQEILSPEDVLLYPANELVAAESAVSSPEALAQRIEVLHRCARGFRGLVV
APISGVRRLLPAPEAMKDARILLQEGGLLALDAFLNQMIEMGYERVERVESRGEMSVRGG
IIDFYPMTARHAYRVELFDEDIDSIRTFDPGDQRSIDKVREVLITPCKEIIASQESLNRA
ADTVLSLLDTQLERMTDRQAKQRLKEEIGREAEMLRERIYFPEMYKYISLLYPEHAHLYD
YMAEDTILVLDEPGRLLETARQLERDEAEWNLHLIQHGKSLPSLPLSLEHEEVIYQQRYQ
SLLISVFLRQVPRMQPKNIVNFITRGMQDFHGQMNVLKAEMERWKKSGIKVMMLGGDAER
MDRMKRVLHDYSIEEPMLLEGSLQNGFELPSVHAAVITEAEMFSQKQRKTRKTSRNMDNA
ERIKSYTELKVGDYVVHQNHGIGKYLGIGTLEINGIHKDYMHILYAGSDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGYGFEKDTA
EQQEFEDIFPYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSTYPMNIEVLSRFRSRKEQNETIKKVKQGTVDILI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVLEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQ
ISELVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVTMLGEPQEPSRDWNTSLDLG
IDAYLPSDYIYDSIQKIEIYKKVAAVASFEEAAELEDELLDRFGELPEAVQNLLAVSRLK
IYGRSYGIDSITQRGDDLVLQFYEGQDKIVNRNSLSQIGSSFEKRVQFEQGSGMSIRLKC
KGLQDPELLKLLEQFLEAAKESFNGKGDLQNAVKK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaagcacttattgatgttttttccgaggataaggattttcaatccattacagcg
ggactggcttccgggatgagagatcagctcatatccgggcttaccggctcctccaggcag
gtcatgatcgcaggggtgatgcagaatcagcagcgtcctgtgctggttgtgacccacaac
atgttctcggcccagaaaatttacgatgaccttcaggagattctatctccggaggatgta
ttgctgtacccggcgaatgagcttgtggcggccgaatcggccgtatccagcccggaggcc
cttgcccagcgaattgaagtgctgcatcgctgtgctcgcggcttccggggccttgtcgtg
gctccgatttcaggggtgcggcggctgcttcccgctccggaggcgatgaaggatgcgcgt
atccttttgcaggaaggaggtctgcttgcgctcgatgccttcctcaaccagatgatcgag
atgggctatgagcgcgtggagcgggtagaatcccggggagagatgagcgtccgcggcggc
attatcgacttttatcccatgacagcccgtcatgcataccgggtggagctcttcgatgaa
gacatcgactccatccgcacctttgaccccggtgatcagcgctcgattgacaaggtccgt
gaggtgctgattacgccctgcaaagaaattatcgcgagtcaggagtcgctgaatcgtgca
gcggatactgtgctgagtctgctggatacccagctggagcgcatgacagaccggcaggcg
aagcagcgcctgaaggaagagatcggccgggaggcggaaatgctgcgggagcgtatttat
ttcccggaaatgtataaatacatttcgctgctatatccggagcacgctcatctgtatgac
tacatggcagaggatacgattctggtgctggatgagccaggacgcctgctggaaaccgcc
cgtcagctggaacgcgatgaagcggagtggaacctgcacctgattcagcacgggaagtcg
ctgccaagcctgccgctctcgctggagcatgaagaggtcatttaccagcaacgctaccaa
agcctgctgatctcggtctttttgcgtcaggtgccgcggatgcagccgaaaaatatcgtc
aatttcattacccgcggcatgcaggatttccatggccaaatgaacgtgctgaaggccgag
atggaaagatggaagaaatccgggatcaaggtgatgatgctcggcggcgatgccgagcgt
atggaccggatgaagcgggtgctgcacgactatagcattgaggagccgatgctgcttgaa
ggcagcctgcagaacggcttcgagctcccttccgtgcatgcagcagtcattaccgaggca
gagatgttctcgcagaagcagcggaagacgagaaaaacaagccgtaatatggataatgcc
gagcggatcaagagctataccgagctgaaggtcggcgattatgttgtgcaccaaaaccac
gggatcggcaaatatctgggcattggtacgctggagatcaatggcattcataaagactat
atgcatattttatatgcgggcagtgacaagctatcggtaccgattgagcagattgatctg
atccagaaatacgtaggctcggaggacaaggagccgaaaatttacaagctgggcggcaac
gaatggacgcgagtgaagaacaaggttcgctcttccgtccaggatattgcggatgatctg
atcaagctgtatgccgagcggcagtccgcaccgggctacggctttgagaaggacacggct
gagcagcaggagttcgaggatatttttccatatgacgaaacgccggaccagctgcgggcg
attacagaaattaagaaggacatggagcagaaccgcccgatggaccgcctgctgtgcgga
gacgtcggctatggcaagaccgaggttgctgtccgtgcagcctttaaagcggcgattgaa
gggaagcaggtggctgtgctggtgccaacgacgatcctggcccagcagcactacgaaacg
ttccgggagcgcttctcaacctatccgatgaacattgaggtgctgagccgcttccgcagc
cgcaaggagcagaatgaaacgattaagaaggtcaagcaggggacggttgatattctgatc
ggaacgcatcgcctgctgtcgcaggacctggtattcaaggatctaggcctcttgattgtc
gatgaggagcagcggtttggcgttactcataaggagaagctgaagcggctgaagacgaac
gtggacgtgctgaccctcaccgccactccgattccgcggaccctgcatatgtccatgctg
ggcgttcgtgatctgtcggtcattgaaaccccgccagaaaaccggtttccggtgcagacc
tatgtgctggagcatagccagacgcttgtccgcgaagcgattgagcgggagctggcccga
ggcggacaggtctactatctgtataaccgggtgcagggaattcaggaaatggctgcccag
atctcagaattggtgcctgaggccaaggtgggcgtgggccacggacagatgagtgaaaca
gagcttgagaagacgattctggattttctggatggggagtatgacgtgctggtcagtacg
agcattatcgagaccggcgtagatatcccgaatgtgaacaccctgatcgtgcacgatgcg
gataagatgggcttgtcccagctctatcagctgagagggcgggtaggccgttccaaccgg
atcgcatatgcgtattttacgtatcagcgggataaggtgttaaccgaggttgccgagaag
cggctgcagtccatcaaggaatttacggagctcggctcgggcttcaagattgccatgcgg
gatttgtctatccggggagcgggcaatctgctcggggcggagcagcacggcttcatcgcc
tccgtcgggtttgatctgtattcccaaatgctggcggaggaaatccagaagcggaaggtc
actatgctgggcgagccgcaggagccgtcccgggattggaacacctccttggatcttgga
atcgatgcctatcttccttctgactatatttatgacagcattcagaagattgagatctat
aaaaaagtggcggcggtggcatcctttgaggaggctgcagagctggaggatgagctgctg
gaccgcttcggtgagctgccggaggccgttcagaacctgcttgccgtgtcgaggctgaag
atatacggacggagctacggaatcgactccattacgcagcgcggggacgaccttgttttg
cagttttacgaaggacaggataaaatagtgaacaggaacagcctttcacagattggaagt
tccttcgaaaagcgtgtacaatttgagcagggctcaggcatgtcgatacgcctgaagtgc
aaaggacttcaagatccggagctgttgaagctgctggaacagtttcttgaggctgcgaag
gagtcatttaacgggaagggagatttacagaatgccgtcaagaaataa
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