Paenibacillus algicola: E6C60_3589
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Entry
E6C60_3589 CDS
T07807
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
palo
Paenibacillus algicola
Pathway
palo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E6C60_3589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palo03019
]
E6C60_3589
Messenger RNA biogenesis [BR:
palo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E6C60_3589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QCT04299
UniProt:
A0A4P8XU45
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All DBs
Position
3749175..3750773
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AA seq
532 aa
AA seq
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MYAVEFRNEIVIIDAGLKFPDAEMSGVDYIIPDIRYLIENKSKIKGLFLTHGHEDHIGAI
PYVLRQIQMPIYGGPLTIGLVRAKLEEHRLLDQSDLRVFHENDKYSFKHLAVHFFRTTHS
IPDAFGVVIETPYGPIVHTGDFKFDFTPEDKPADIHKIMSLGRRGVLALLADSTNSEREG
FTPSERTVGLSILKQFQESPGRILFATFASNVHRLQQVVEAAIQTNRKLAIVGRSMEKVF
TIGQELGYIRIPDGMLIDVKTVNRYRDHQVAIICTGSQGEPNAALTRIASGSHRSIQIHP
DDTVIFSSSPIPGNTQNVNRSIDLLMRAGAEVRYGSILDIHTSGHGCREDLKLMLSSLRP
KYFVPIHGEYRMLLNHRQLAKDVGVPENHVYLLNIGNTLSLFRNGARKGRNIPSGDVYIN
NGELRTHEKELLEERVQLAHDGVVIAAMTLNRETRKLIAGPELITRGFVYMQDSKPLLRR
AEAMLRKHLNKAGEQREYDESAWEQMTTSTLNRYFKRELGRSPYIMPSIMEI
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcggtcgaattccgcaatgaaatcgtgatcattgatgccggattgaagttcccg
gatgctgaaatgagcggagtcgattacattattcccgatatccgctatctgattgagaat
aagagcaagatcaagggcctgttcctgactcatggacatgaagaccatatcggagctatt
ccttatgtactgcgccagattcagatgcctatttatggaggaccgctgacgatcggtctc
gttcgcgcgaagctcgaagagcaccgcctgctggatcaaagcgatctgcgggtgtttcat
gagaatgataaatacagcttcaagcacctcgccgtgcatttcttccgtacgacacacagt
attccggatgcattcggcgtcgtcattgaaactccatacggacctattgtccataccgga
gacttcaagttcgactttactccagaggacaagccggccgacattcataagattatgagc
cttggccgccgaggggtgcttgcgcttctcgcggacagcacaaacagtgagcgtgagggc
ttcactccttccgaacgaaccgtagggctgtccatcctgaagcagttccaggaaagcccc
ggccgaattctgttcgcgaccttcgcctccaatgtccaccgtctgcagcaggtcgtagag
gccgctatacagacgaaccgaaagctcgccatcgtgggacgaagcatggagaaggtgttt
acgatcggccaggagctgggctatatccgaatcccggacggcatgctgattgatgtgaaa
acggtcaaccgttaccgtgaccatcaggtcgcgattatttgtacaggcagccagggcgag
cccaacgcggctctcacccgaattgcttcaggatcacaccgctcgattcagattcatccc
gatgatacggtaatcttctcctcctcgccgattccggggaatacgcaaaatgtgaaccgg
agcatcgatctgctcatgcgcgctggcgctgaagtaagatatggctcgattctggacatc
cacacgtccggccacggttgccgcgaggatctcaagctgatgctcagcagcctgcgtccg
aaatatttcgtgccgattcacggagaataccggatgctgctcaatcatcgtcagctggcg
aaggatgtgggcgttcccgagaatcatgtttacttgctgaacatcggcaacaccctttcc
ttgttccgcaacggggctcgtaaaggccgtaacatcccatccggagatgtctatattaac
aacggagagcttcgcacgcacgagaaggagctgctggaggagcgcgtgcagcttgctcac
gacggtgtcgtcattgctgccatgaccctgaaccgtgaaacgcggaagctcattgccggt
cccgagctgatcacccgcggattcgtttacatgcaggactcgaagccgctgctgcgccgg
gctgaagccatgctgcgcaagcatcttaacaaggctggagagcagcgggagtacgatgag
tctgcatgggagcagatgacaacatcgaccctcaatcgttatttcaagcgcgagcttgga
cggagcccttacatcatgccttccattatggagatctaa
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