Paenibacillus algicola: E6C60_3741
Help
Entry
E6C60_3741 CDS
T07807
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palo
Paenibacillus algicola
Pathway
palo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E6C60_3741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palo03021
]
E6C60_3741
03400 DNA repair and recombination proteins [BR:
palo03400
]
E6C60_3741
Enzymes [BR:
palo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E6C60_3741
Transcription machinery [BR:
palo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E6C60_3741
DNA repair and recombination proteins [BR:
palo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E6C60_3741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QCT04448
UniProt:
A0A4P8XP87
LinkDB
All DBs
Position
complement(3943793..3947404)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLERKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMVMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGTGMILGSVNEAVSAYQRGAAGLHARVAIP
VKALGKTSFTDKQQQAMLVTTVGKIIFNEIYPATFPYINEPTRENLFQGTPEKFFVYEKG
ADIQEVIQSLPISGAVGKEYLGQIIARCFETYHTTETSVILDKIKQLGFTYSTRAGVTVA
VSDVIVPDEKNEILKESDGKVSVVMNQYRRGLITNEERYDRVIDIWSKAKDDITEVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDECSTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETGEILVHRNELIDSDKADAIVKAGVEKLQIRSILSCRARHGVC
KKCYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEIQGEAETKVYSVTYGSRLRVSEGKQIEA
GDELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKFRI
VDAGDTSLLPGSFVDLHEYESANKVAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFEGQDEVSDNQELESV
NAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgttaacaattttgagtacatgaaaatcggcctggcttccccggagaagatt
cgttcttggtcccgaggtgaagtcaagaagccggaaacgattaactaccgtacattgaag
ccggagaaggaaggcttgttctgcgaacgtatttttggtcctcagaaggactgggaatgt
cattgcggcaagtataagcgcgtccgttataaaggcgttgtgtgcgatcgctgcggcgtt
gaggttactcgcgcgaaggttcgccgcgaacgcatgggccatatcgagctcgctgctcct
gtatctcatatctggtactttaaaggcattccgagccggatgggccttgcgctggatatg
tctccacgatccctggaggaaattatttatttcgcttcgtatgtcgtgactgacccgggt
gatacacctcttgaaagaaaacagctgctgtccgagaaggaataccgcagctaccgtgag
aagtacgggtacggattccaggctggtatgggtgccgaggctgtgaagaagcttcttcag
gacttggacatcgataaagagctggagttcttgaaagaagagctgcgtaccgctcaaggg
cagcgccgcaaccgtgcgatcaagcggctggaggttattgaggccttccgtaactccggt
aacaatccggagtggatggttatggatgtgcttccggtcattccgccggagctgcgcccg
atggttcagctggacggtggacgttttgcgacatcggacctgaatgatttgtatcgccgc
gtcattaaccggaacaaccgtctgaagcgtcttttggacctgggtgcgccggatattatc
gttcagaatgagaagcggatgctgcaggaagcggtagacgcccttattgacaacggacgc
cgtggccgtccggtaactggtcccggcaaccgtcctttgaaatctctcagccatatgctg
aagggtaagcagggccgtttccgtcagaacctgctgggtaagcgggtagactactccggc
cgttcggttatcgtagtcggtccttacctcaaaatgtatcagtgcggcctgccgaagaag
atggcactggagctgttcaagccttttgtgatgaaagagctcgtgaacaagggtcttgcc
cacaatatcaagagtgctaaacgcaaggtagaacgcgtaagccctgaggtatgggacgtt
cttgaagaagttattaaggagcatccggttctgctgaaccgtgccccaactctgcataga
ctcggaatccaggcgttcgagccgattctggtagaaggtcatgcaatccgtctgcatccg
ctcgtatgtacggcctacaacgccgactttgacggtgaccagatggcggtgcacgtaccg
ctttcggcggaagctcaagcagaggcacgtttgctgatgctggcctccggtaacattttg
aacccgaaagacggcaagccagtcgtgactccgtcccaggatatggttctcggctccttc
tacctcacgatggacaacaaagaggaaaaaggcaccggcatgattctgggtagtgtcaac
gaagcagtgtccgcttatcagcgtggtgctgcaggactgcatgcacgcgtagccattccg
gtgaaggcattgggcaaaaccagctttaccgacaagcagcagcaggctatgctcgtgaca
acggtcgggaagattatttttaacgaaatttacccggcaaccttcccttatatcaacgaa
ccgactcgtgagaacctgttccagggcactccggagaagttctttgtatatgaaaaaggc
gctgacatccaggaggttattcagagcctgccaatcagcggggcggtcggcaaagaatac
ctgggtcaaatcattgcacgctgcttcgagacgtatcatacaaccgagacctctgtgatt
ttggataaaatcaaacagctcggctttacgtattccacacgtgcaggcgtcactgtcgca
gtatccgacgttattgtaccggatgagaagaacgagattctgaaggaatctgatggtaag
gtcagcgtcgttatgaatcagtaccgccgtggtctgattacgaatgaagagcgctatgac
cgcgttattgatatctggtccaaggcgaaggatgatattaccgaagtgctcatgaagtcg
atggaccgcttcaactccatcatgctcatggtagattccaaggcacggggtaacaaatcc
cagatcacacagctcggcggtatgcgcggtctgatggcgaacccgtccggacgaatcatt
gaattgccgatcaaatcgaacttccgtgaaggtctgacggtactcgagtacttcctgtcc
acgcacggtgcgcgtaaaggtcttgctgatacggcgctgcgtacagcggattccggttac
cttacccgtcgtctggttgacgtggcccaggatgtcattgtacgtgaagacgagtgcagc
acggataaaggcttcactgtgagccggattcaggacggtaaggaagtaatcgaggatctg
tatgatcggattgaaggacgttactcctttgaaacggttcgtcatccggaaaccggagaa
attctcgtgcaccgtaatgagcttattgactccgataaggcagatgctatcgtaaaagct
ggtgtcgagaagcttcaaatccggtctattctaagctgtcgtgcccgtcacggcgtctgc
aaaaaatgctacggccgtaacctggctaccggcaaatttgtggaaattggcgaagctgtc
ggtattatcgcagcccaatccatcggggagccgggaacccagctcacgatgcgtacgttc
cataccgggggcgtagcgggtgatgatatcacgcagggtcttccgcgtattcaggagctg
tttgaggcccggaatccgaaaggtcaggctaccatcagtgagattgacggtgtcgtgaaa
gaaatccgtgaaaccaaggaccgccgcgagattgagatccagggtgaagcggagaccaag
gtgtattctgtcacctacggttctcgtctgcgcgtaagcgaaggcaaacaaatcgaagcc
ggggatgaattgaccgagggctcgattgaccctaaagaaatgctgcgcattaaaggaatc
cgaggcgtgcagaactatatccttcaggaagttcagcgcgtataccggaaccagggcgta
gaaattaacgataagcacgtggaagtcatgatccgccagatgctgcgtaaattccgcatt
gttgacgcgggagataccagcctgcttccaggctccttcgtggatctgcacgaatatgag
tctgcaaacaaggtggcgatcctgtcgggtaaagagccggcagtggcgaagccggtgctg
ctcggtattaccaaggcatctctggagacagattcattcctgtccgcggcctccttccag
gagacaacccgcgtactgacagatgccgcaatcaagggtaaagttgaccagctgctcggt
ctgaaagagaatgtaatcattggtaagctgatccctgcaggaacaggtatgaaccgttac
cgcagtgtgaagtttgaaggccaggacgaagtctcggacaaccaagagctggaaagtgta
aacgcggagtaa
DBGET
integrated database retrieval system
