Paenibacillus algicola: E6C60_3951
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Entry
E6C60_3951 CDS
T07807
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palo
Paenibacillus algicola
Pathway
palo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E6C60_3951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palo03019
]
E6C60_3951
03009 Ribosome biogenesis [BR:
palo03009
]
E6C60_3951
Enzymes [BR:
palo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E6C60_3951
Messenger RNA biogenesis [BR:
palo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E6C60_3951
Ribosome biogenesis [BR:
palo03009
]
Prokaryotic type
rRNA helicases
E6C60_3951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CbiQ
V1R
Motif
Other DBs
NCBI-ProteinID:
QCT04656
UniProt:
A0A4P8XP80
LinkDB
All DBs
Position
complement(4188630..4190105)
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AA seq
491 aa
AA seq
DB search
MPNFQQLGIDEKMVRRLKEQGISVPTPVQQESIPMLLAGKDIIARARTGTGKTLAFMLPI
LKQIDAAKPYPQALIVAPTRELALQITEEARKLSSGTPEGVKLLAVYGGQDVEKQLRKLE
GGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEAIIAALPYKRQS
MLFSATMPDRVKQLAANYMNKPVDIVIKEGGSSLIPLQNIKQVLVECTDRTKQDALKGML
ELHQPYLAMIFCRTKRRAQTLNEALLSHGYASDELHGDLSQAKREAVMKRFREAKLQLLV
ATDVAARGLDVEGVTHVYNYDMPHDVESYVHRIGRTGRAGGTGLAVTFAAPKDGFDLEKL
ERTLSIKLKRITWDGRSGEVREGSSGQRSSRSNGSSEGREGSGERRERRDGTSGGRGRSE
GSRRSEASGGRGRTSGGRGGQSSGGPRSGKSSTGAGRSGGRGTGGSGRSSGGSSRHAGSG
GSGSGRRGRTR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaactttcaacaattaggcatcgatgagaaaatggtacgcaggctgaaggagcag
ggaatttctgtgccgaccccggtgcagcaagagagtataccgatgctccttgcgggaaag
gatatcattgcccgcgcgcgtaccgggaccggcaaaacgctggcgtttatgctgccgatc
ttaaagcagattgacgccgccaagccgtatccgcaggcactgatcgtagcgccgacgcgg
gagctggcgctgcagattaccgaagaggcgcggaagctgtcctccggcaccccggaaggc
gtcaagcttctggccgtctatggcggtcaggatgtggagaagcagctgcgcaagctggag
ggcggccgtcatctgattatcggtactccagggagactgctggatcatttgcggcgcggc
acgctggagctgggcggcgtgaagcagctcgtgctggatgaagcggatcagatgctgcat
atgggctttctggatgaggtggaggcgatcatcgcagcgctgccgtacaagcgtcagagt
atgctgttctcggctacgatgccggatcgcgtcaagcagcttgctgcaaattatatgaac
aagcccgtggatattgtcatcaaggagggcggcagctcgctcattccgctgcagaatatc
aagcaggtgctggtagagtgcacggaccggacgaagcaggatgcactgaagggcatgctg
gagctgcaccagccgtatctggcgatgatcttctgccgcacgaagcggcgcgcccagacc
ttgaacgaagcgctcctgtcgcacggctatgccagcgacgagctgcacggcgacttgtcc
caggcgaaacgcgaagcggtcatgaagcggttccgggaagccaagcttcagctgctggtg
gcgaccgatgtcgcggcgcggggactggacgtggaaggcgtgacccacgtgtataattac
gacatgccgcatgatgtcgagagctatgtccaccggatcggccggacgggacgtgccggc
ggcacgggtcttgcggtaacattcgcggcaccgaaggacggatttgatctggagaagctg
gagcgcaccctctccatcaagctgaagcggatcacctgggacggccgcagcggtgaagtc
cgcgaaggatcgtccggtcagcgcagcagccgaagcaacggctcctccgagggccgggaa
ggcagcggcgagagacgcgagcgccgggacggcacctcgggtggacgcggacgcagcgaa
ggttcgcgccggagcgaggcatccggcggccggggccggacgtctggcggcagaggcgga
cagagcagcggcgggccgagatccggcaagagcagcacgggagccggccgcagcggcggc
agaggtacaggcggaagcggccggagctctggcggctccagcagacatgccggcagcgga
ggttcaggcagcggacggcgcgggcgcactcgttaa
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