Paenibacillus algicola: E6C60_3979
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Entry
E6C60_3979 CDS
T07807
Name
(GenBank) DEAD2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
palo
Paenibacillus algicola
Pathway
palo03022
Basal transcription factors
palo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
E6C60_3979
09124 Replication and repair
03420 Nucleotide excision repair
E6C60_3979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palo03021
]
E6C60_3979
03036 Chromosome and associated proteins [BR:
palo03036
]
E6C60_3979
03400 DNA repair and recombination proteins [BR:
palo03400
]
E6C60_3979
Enzymes [BR:
palo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
E6C60_3979
Transcription machinery [BR:
palo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
E6C60_3979
Chromosome and associated proteins [BR:
palo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
E6C60_3979
DNA repair and recombination proteins [BR:
palo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
E6C60_3979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
PDDEXK_1
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCT04684
UniProt:
A0A4V1G4H2
LinkDB
All DBs
Position
complement(4220474..4222762)
Genome browser
AA seq
762 aa
AA seq
DB search
MSHRIEISVRPLVEYVFRSGSIVSGFRTSSSLTEGTRAHQLIQRSYGEQDQKEVHLTAEI
PCGDLIFAIEGRCDGLILSGDGPVIDEIKSTAGTLEEIQEDTYPVHWAQAQMYAYMYNRL
HPQTPITVQLTYIQIRSQEIKTFRRILTAAELEEFALGVAESYAPYARLRLQHAQQRDES
IRQLSFPFPDYRQGQRRLMGAVYRSIGEGQRLFAKAPTGIGKTISTLFPSIKAMGEGTLQ
RIFYLTAKTITRTAAEEALEHLAAEGLRLHAVTLTAKDKICFGAEEGCTSEGCVFSEGYY
DRINGAILDLLEHETSMTRPVIEAYARKHRVCPFEFSLDAAYAADVVICDYNYIFDPKVS
LKRMQEDAKKSSVLLVDEGHNLVDRARSMYSAELRKSMFLDVQRAFKERNPGVYQAAKTV
NNRFIVLRKVSGEEPRVVGSSQPEMLDELLEAFVQQAEPELMSGRGGEENELLLECYFAA
QGYLRISRLYDERYVTYAEMDGSEVFLKLFCLNPSHLLRQAGKNFRSTIIFSATLTPLMY
YRDMLGAEEEDYSLSIPSPFSADQLEVKLLPVSTRYKDRERSKGAILSLLTELVKEKPVN
TLVFLPSYPYMQEIHAAFSAAHPEMRTLLQGHGMSEGEREAFLGAFRQSGGGPIVGFAVM
GGIFSEGIDLKGERLSSVVVVGVGLPQLSFENDIIRTYFDRLGKNGYDYAYVYPGMNKVL
QAGGRLIRSESDTGTLVLVDDRFQNRQYHQLLPEEWRSYKRL
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatagaattgaaatatcggtccggccgctggtggagtacgtgttccggagcggc
agtattgtgtccggcttccgtacctcctcctccctgaccgagggaacgagagcgcatcag
ctcatccagaggagctatggagagcaggaccagaaggaagtgcatctcacggctgaaatt
ccgtgcggcgacctgatttttgcaattgaggggcgctgtgacggattgattctgtccggg
gacgggccggtgattgacgaaatcaagtccaccgccggcaccctggaggagattcaggag
gacacttatcctgttcactgggcccaggcccagatgtatgcctatatgtacaatcgtctt
cacccgcagacgccgattacggtgcagctgacctatattcagattagaagtcaggagatc
aagacgttccgccgcatcttgacggctgccgagcttgaagaatttgctcttggtgtagcg
gagagctacgctccgtatgcccggctccggcttcagcatgcacagcagcgggatgagagc
atccggcagctttcgttcccttttccggattaccggcaggggcagcgaaggctgatggga
gcggtctaccgaagcattggagaagggcaaaggctgtttgcgaaggcaccgacagggatt
ggcaagacgatctcgacgctgtttccttcgatcaaagcgatgggagaagggacgctgcag
cggatcttctatttaacggcgaagaccattacccggaccgccgcagaagaagcgctggag
cacctcgctgccgaggggctgcggctgcatgcggtaaccttgacggcgaaggacaagatt
tgcttcggggcggaagagggctgcacttcagagggctgtgtgttttccgaaggatattat
gaccggatcaatggggcgattctggatctgctggagcatgagacgtcaatgacccggccg
gttattgaggcttatgcgcgcaagcaccgggtatgtccgttcgagttctcgctggatgcg
gcttacgcggccgatgttgtcatttgcgattacaattatatttttgatcccaaggtgtcg
ctgaagcggatgcaggaggatgccaagaaatcctctgtgctgctggtggacgagggtcac
aatctggtggaccgtgcccgcagcatgtattcggcagagctgaggaagtcgatgttcctg
gacgtgcagcgcgcttttaaagagcggaatcccggagtttatcaggcagccaagacggtg
aacaaccgttttattgtgctgcgcaaggtaagcggggaggagccgcgggtagtcggctca
agtcagccggaaatgctggatgagctgctggaggcgtttgtgcagcaggcagagccggag
ctgatgagcgggcggggcggcgaggagaacgagctgctgctggagtgttattttgcggcc
cagggatatttgcgcatttcccggctgtatgatgagcggtatgtcacctatgcggagatg
gacggcagtgaggtctttctgaagctgttctgcttaaacccctcgcatctgctccggcag
gcgggcaagaacttccggtccaccattattttctccgccacgctgaccccgctgatgtat
taccgggacatgctgggtgcggaggaggaggattacagcctgtcgatcccgtctccgttc
tctgcggaccagctggaggtgaagctgctgccggtctctacacgctacaaggaccgggag
cggagcaagggagcgatcctttcgctgctgacagagctggtgaaggagaagccggtgaac
acgctggtgtttctgccgtcttatccatatatgcaggagatccatgcggcgtttagcgcg
gcgcatcctgagatgcgcacgctgctgcagggtcacgggatgagtgagggagagcgggag
gcttttctgggtgcgttccgccagagcgggggcggccccattgtcgggttcgcggtcatg
ggcggcattttttcggaaggtatcgacttgaagggagaacgcctttcttccgtcgtggtg
gtcggagtggggctcccgcagctgtcatttgagaatgacatcattcgtacctatttcgac
cgccttggcaaaaatggctacgattacgcctacgtctaccccggcatgaacaaggtgcta
caggccggcgggcgtctgatccgctccgagagcgataccggcacgctggtgctggtggac
gaccggttccagaaccggcagtaccaccagctgctgccggaggagtggcggagctacaag
cggctgtaa
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integrated database retrieval system
