Paenibacillus algicola: E6C60_4125
Help
Entry
E6C60_4125 CDS
T07807
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palo
Paenibacillus algicola
Pathway
palo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E6C60_4125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palo03019
]
E6C60_4125
03009 Ribosome biogenesis [BR:
palo03009
]
E6C60_4125
Enzymes [BR:
palo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E6C60_4125
Messenger RNA biogenesis [BR:
palo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E6C60_4125
Ribosome biogenesis [BR:
palo03009
]
Prokaryotic type
rRNA helicases
E6C60_4125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QCT04830
UniProt:
A0A4P8XS59
LinkDB
All DBs
Position
complement(4382959..4384407)
Genome browser
AA seq
482 aa
AA seq
DB search
MNERSFQDYQLSEDILRALDNLGYQMPTEVQSSVIPSALKQKDMTVKSRTGSGKTAAYGI
PICQMVEWDQNRPQALILTPTRELADQVKQDMMNIGKYKRIKAIAIYGKQPFARQKTQLT
YRNHVVVGTPGRIMDHIEKQTIDLEQVRFLVIDEADEMLNMGFIEQVEKIIRELPKNRLT
MLFSATLPKDVENLCHRYMNHPLDIEVKAGSEATNQIEHSLYMVKDEDKLQLLRAITVIE
NPDRCIIFCRTQTRVEVVYKELEKQGYPCNRIHGGMEQDERTQVMNKFKLGHFRYLIATD
VAARGIDIENISHVMNYDLPLENESYVHRTGRTGRAGQSGKAISFAKPNEEKFILNIEAY
IGFDIPRKSNPSAEAVTRGKAAFEAKSGKQPSITKGRGSRLGQDVMKLYFNGGKKKKIRA
VDFVGTIAKIEGVSAADIGIITIEDHASYVDILNGKGRIVLHMMKDTTVKGKLLKVQEAN
RS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacgaagttttcaggattaccaattaagcgaggatattctccgcgccttggat
aatttgggatatcaaatgccgacagaggttcaaagcagtgtaattccctctgcgcttaag
cagaaggatatgaccgtgaaatcccgcacaggaagtgggaaaacggcagcttacggcatt
ccaatctgccaaatggtagagtgggatcagaatcggccgcaggccttgattttgacgccg
acgcgagagcttgccgatcaggttaagcaggatatgatgaatatcgggaaatacaaacga
atcaaagcaattgcgatttacggcaagcagccatttgctagacagaagacgcaactgaca
tacagaaatcatgtggttgtgggcacgccaggacggattatggaccatatcgagaagcaa
acgatcgatctggagcaagtgagatttctcgtgattgacgaagccgatgagatgctaaac
atgggatttattgagcaggtggagaaaattatccgcgagctgcccaagaatcggttgact
atgctgttctccgccacactgccaaaggatgtcgagaatttatgccaccgatatatgaac
catccgttggatattgaggtgaaggcaggctccgaagcgacaaatcagattgagcattcg
ttatatatggtaaaggatgaggacaagcttcagttactccgggcaatcaccgtgatcgag
aatccggatcgttgtattattttttgccgaacgcagactagagtcgaggtcgtttataaa
gagttggaaaaacagggatatccctgtaacagaatccatggaggcatggagcaggacgaa
cgcactcaagtgatgaacaagtttaagttaggacacttccgctatctgattgctacggat
gtagccgcaagagggattgatatcgagaacatcagtcacgtcatgaactatgatcttcca
ttggagaacgagagctacgtacaccgcacgggtcgaacgggaagagccgggcaatccggg
aaagcgatctcctttgccaagccgaatgaagagaaattcattctgaatattgaagcctat
atcgggtttgacatccctaggaaatcaaatccatccgcagaagcagtgacacggggaaag
gcggcttttgaagcgaagtcagggaagcagccatcgattacaaaaggccgcggctctcgc
ctggggcaggatgtaatgaaattgtattttaatggcggaaagaaaaagaagatcagagct
gtggactttgtaggtactatagccaaaatcgaaggtgtgtcggcagcggacattgggatt
attaccatagaagatcatgcttcctatgtggatattcttaatggcaaaggccgaatagtg
cttcatatgatgaaggatacgaccgttaaagggaagcttctcaaggtgcaggaagcgaac
agaagctaa
DBGET
integrated database retrieval system
