Paracoccus alcaliphilus: JHW40_01890
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Entry
JHW40_01890 CDS
T08960
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03420
Nucleotide excision repair
palp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHW40_01890
03430 Mismatch repair
JHW40_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palp03400
]
JHW40_01890
Enzymes [BR:
palp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHW40_01890
DNA repair and recombination proteins [BR:
palp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHW40_01890
MMR (mismatch excision repair)
Other MMR factors
JHW40_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
CarD_TRCF_RID
PcrA_UvrD_tudor
DUF3553
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WCR19783
LinkDB
All DBs
Position
complement(351929..354295)
Genome browser
AA seq
788 aa
AA seq
DB search
MELMDDSDEFDGVPLSQRAMAARPAPYLDGLNPAQRAAVEVLDGPVLMLAGAGTGKTRAL
TTRIAHLLMLGRARPGQILSVTFTNKAAREMKDRIGRLLGEAVEGMPWLGTFHSISVKIL
RRHAELIGNGQLHLKPGFTILDTDDQIRLMKQLIQAENLDEKRWPARQLAHLIDGWKNRC
LTPANLPKGEAGAFDGWGGRLYAAYQERLLTLNAVDFGDLLMHCVTLFQAHPGVLRGWQE
RFRYILVDEYQDTNIAQYMWLRLLAQGHRNICCVGDDDQSIYGWRGAEVGNILRFGKDFP
GAQVIRLEQNYRSTPQILAAASGLISANQGRLGKTLWTDAEPGEKVRLIGHWDSEAEARW
IGEEIEAFQGGHRAALGQVSLDQMAILVRASHQMRAFEDRFMTIGLPYRVIGGPRFYERA
EIRDAMAYFRLVVSPSDDLAFERIVNTPKRGLGDKALQTIQGVARQNGVPLLEGARIVVQ
DGHLGGKGLANLRLFVNAIGRWHADAIDSTASHVELAERILDESGYTAMWQNDKSPDAPG
RLDNLKELVKALEEFENLQGFLEHVALVMDRDDGETVEQVSIMTLHAAKGLEFPVVFLPG
WEDGLFPNQRAMDDQGLKGVEEERRLAYVGITRAERLATISFAGNRRLYGQWQSSMPSRF
IDELPSEHVEVLTPPGLYGGGYGAAMAFAGANPGDAMYERAARADVYNSPGWKRMQARAA
ERKGPVHRAPVTIDAIGFSVGDRVVHAKFGEGQVMGIAEDTLTVQFETGFKTIKAGYVQP
ADAGDVPF
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggagctgatggacgattccgacgaattcgatggcgtgccgctgtcgcaacgggcgatg
gccgcgcggcccgcaccctatctggacgggctgaacccggcgcaacgcgccgcggtcgag
gttctggatggcccggtcctgatgctggcgggcgcgggcaccggcaagacgcgggcgctg
accacgcgcatcgcgcatctgctgatgctgggacgggcgcggccgggacagatcctgtcc
gtgacattcaccaacaaggccgcgagagagatgaaggaccgcatcggccgtctgctgggc
gaggcggtcgaggggatgccgtggctgggtaccttccacagcatcagcgtcaagatcctg
cgccgccatgcagaactgatcggcaacggccagttgcacctgaagcccggctttacgatt
ctggataccgacgaccagatccggctgatgaagcagttgatccaggccgaaaatctggac
gagaaacgctggcccgcgcggcagctggcacatctgatcgacggctggaagaaccgctgc
ctgacgccggccaatctgcccaagggcgaggccggggcgttcgacggttggggcgggcgg
ctttacgcggcctatcaggaacggctgctgacgctgaacgcggtcgatttcggcgatctc
ctgatgcattgcgtgacgctgtttcaggcgcatcccggtgtgctgcgcggctggcaggaa
cggttccgctatatcctggtggacgaatatcaggataccaatatcgcgcagtatatgtgg
ctgcggctgctggcgcaggggcatcgcaatatctgctgcgtgggggacgacgaccagtcg
atctatggctggcgcggcgccgaggtgggcaatatcctgcggttcggaaaggattttccc
ggcgctcaggtgatccggctggaacagaactatcggtccacgccgcagattctggcggcg
gcttcggggctgatctcggccaatcaggggcggctgggcaagacgctgtggaccgatgcc
gaaccgggagagaaggtgcgcctgatcgggcactgggacagcgaggccgaggcccgctgg
atcggcgaagagatcgaggcgtttcagggcggccaccgtgccgcgctgggtcaggtcagt
ctggaccagatggcgatccttgtgcgcgcgtcccaccagatgcgcgccttcgaggatcgc
ttcatgaccatcggtctgccttatcgggtgatcggcgggccgcgcttttatgaacgggcc
gagatccgcgatgcgatggcctatttccggctggtggtcagcccctcggacgatctggcg
ttcgagcggatcgtgaacaccccgaaacgcggccttggcgacaaggccctgcaaaccatc
cagggcgtggcgcgccagaacggggtgccgctgctggaaggcgcgcggatcgtggtgcag
gacggccatctgggcggcaaggggctggccaatctgcggctgttcgtgaatgcgatcggg
cgctggcatgcggatgcgatcgacagcaccgccagccatgtcgaactggccgagcggata
ctggacgaatccggctataccgccatgtggcagaacgacaagtcgcccgatgcgccgggc
cgtctggacaacctcaaggaactggtcaaggcgctggaggaattcgagaacctgcaaggc
tttcttgaacatgtcgcgctggtcatggaccgcgacgatggcgagacggtcgaacaggtc
agcatcatgacgctgcacgccgccaaggggctggaatttccggtcgtctttctgccgggg
tgggaggacgggctgttccccaaccagcgcgccatggacgatcagggcctgaagggcgtc
gaggaggaacgccgtctggcctatgtcggcatcacccgtgcggaacgtctggcgacgatc
agctttgccggcaaccggcggctttacgggcaatggcaaagctcgatgccctcgcgtttc
atcgacgaattgccgtccgaacatgtcgaggtgctgacgccgccgggcctttacggcggc
ggctatggcgcggcgatggcctttgccggggccaatccgggcgatgcgatgtatgaacgc
gcggcgcgggcggatgtctataactcgcccggctggaagcggatgcaggcgcgcgcggcc
gagcgtaaggggccggtgcatcgcgcgccggtcaccatcgacgccatcgggttcagcgtc
ggagaccgcgtggttcatgcgaaattcggcgaaggtcaggtcatgggcatcgccgaggat
acgctgaccgtgcagttcgaaacaggcttcaagaccatcaaggcgggttatgtccagccg
gcggatgcgggtgacgtgccgttctag
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