Paracoccus alcaliphilus: JHW40_07715
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Entry
JHW40_07715 CDS
T08960
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW40_07715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palp03019
]
JHW40_07715
Enzymes [BR:
palp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHW40_07715
Messenger RNA biogenesis [BR:
palp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHW40_07715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
DEDD_Tnp_IS110
NAT10_TcmA_helicase
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WCR19534
LinkDB
All DBs
Position
complement(1523518..1524879)
Genome browser
AA seq
453 aa
AA seq
DB search
MDNNKRPRRFRDGNSPRPAQSHFSPNAGRNAPAREPLATGPFADMGIDHRINANIAAMGL
TRPTPIQEQGIPAVVEGRDVMGLAQTGTGKTAAFGLPMLTRLIKYGKKPDPKTCRALILA
PTRELATQIATNIEAYAEGTPIRSYRVVGGASINVQTERLSRGVDVLIATPGRLIDLIER
RAIDLRETTYLVLDEADQMLDIGFIHALRRIAKMLPKQRQTLLFSATMPKLMEELAATYL
TNPVRVAVNPPGQAAKKIDQGVHFVSQGDKATLLAEYLSKHIGELAIVFGRTKHGSDKLA
RLLEKWGFSVAAIHGNKSQGQRERALEAFRKGQTQVLVATDVAARGLDIPEVAHVYNYDL
PNVPDNYIHRIGRTARAGRDGRAVAFCAPAEIDELRAIEKTMKTSIPVIGGEAPPAQATS
SRAAKGRPARPNGGNARPARRPSRKPAGQRSNA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggataacaataaacgtccccgccgtttccgtgacggcaattccccgcgcccggcccag
tcgcatttctcgcccaatgccggacgcaacgcaccggcgcgcgaacctttggccaccggg
ccgttcgcggatatggggatcgaccatcgcatcaacgccaatattgccgccatgggcctg
acccggccgacgccgattcaagagcagggcatccccgccgtggtcgaaggccgcgacgtg
atgggccttgcccagaccggcaccggcaagaccgcagctttcgggctgccgatgctgacc
cggctgatcaaatacggcaagaagcccgaccccaagacctgccgcgcgctgatccttgcg
ccgacgcgggaactggcgacgcagatcgccaccaatatcgaagcctatgccgaaggcacg
ccgatccggtcctatcgcgtggtgggcggtgcctcgatcaacgtccagaccgagcggctg
tcgcgcggcgtggatgtgctgatcgccacgcccggccgcctgatcgacctgatcgagcgc
cgtgccattgacctgcgcgagaccacctatctggtgctggacgaggccgaccagatgctg
gacatcggctttatccacgcgctgcgccggatcgcgaagatgttgccgaaacagcgccag
acactgctgttttcggccaccatgccgaagctgatggaggaactggccgcgacctatctg
accaatccggtccgggtcgccgtgaaccctccgggtcaggccgcgaaaaagatcgaccag
ggcgtgcatttcgtcagtcagggcgacaaggcgacgctgctggccgaatatctgtcgaaa
catatcggcgaactggcgatcgtctttggccgcaccaagcatggttcggacaagctggcg
cggttgctggaaaagtggggcttttcggtcgccgcgatccacggcaacaaaagccagggt
cagcgtgaacgcgcgctggaggccttccgcaagggtcagacgcaggtgttggttgcgacc
gatgtcgccgcgcgcgggctggatatccccgaggtcgcgcatgtctataactatgacctg
ccgaacgtgccggacaactatatccaccgcatcggtcgcaccgcgcgtgccggacgtgac
ggccgtgccgtcgccttctgcgccccggctgaaatcgacgagctgcgcgccatcgaaaag
acgatgaagacctcgatcccggtgatcgggggcgaggcgccgccggcgcaggcaacgtcc
tctcgtgcggccaagggccggcctgcccgccccaatggcggcaatgcccgcccggcgcgg
cgcccctcgcgcaaacctgcggggcaacgctcgaacgcataa
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