Paracoccus alcaliphilus: JHW40_07975
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Entry
JHW40_07975 CDS
T08960
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW40_07975 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palp03019
]
JHW40_07975 (pnp)
03016 Transfer RNA biogenesis [BR:
palp03016
]
JHW40_07975 (pnp)
Enzymes [BR:
palp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JHW40_07975 (pnp)
Messenger RNA biogenesis [BR:
palp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JHW40_07975 (pnp)
Transfer RNA biogenesis [BR:
palp03016
]
Prokaryotic type
tRNA degradation factors
JHW40_07975 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WCR19579
LinkDB
All DBs
Position
1572644..1574788
Genome browser
AA seq
714 aa
AA seq
DB search
MFDEVKKSIQWGQETLTLETGKVARQADGSVVATLGETSVMANVTFAKEPKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPCRPLFAPGFKHEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGFAHGQYVLNPEIADMDQLRGNPEQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVKFGHEQMQPVIDLIIDLAEAAAKEPFNFQ
SPDYSALYARVKSLGEADMRAAYAIRDKGERRDAIDVAKAKVIEGLTEEELADANLGSAL
KKLESGILRGDIINGGARIDGRDNKTVRAIDSEVGILPRTHGSSLFTRGETQALVVTTLG
TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGRYA
VLTDILGDEDHLGDMDFKVAGTAEGITSLQMDIKVAGITPEIMEQALAQAKDGRMHILSE
MSHALTEGRREFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDISDDGTIK
IASANADSINKAYDMIYSIVAEPEEGKVYTGKVVKLVDFGAFVNFFGKRDGLVHVSQIAN
KRLGHPNELLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEITEKKEESAEG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgaagtgaagaaatccatccagtggggtcaggaaaccctgacgctggaaacg
ggcaaggttgcccgtcaggccgacggctcggttgttgccactttgggcgaaaccagcgtc
atggccaacgtgaccttcgccaaggaacccaagcccggtcaggactttttcccgctgacc
gtgcattatcaggaaaaatactatgctgcgggcaaggtgcccggcggctttttcaagcgc
gaggcgcgcccgaccgaaaaagagacgctgaccgcgcgtctgatcgaccgtccctgccgc
ccgctgttcgcccccggcttcaagcatgaagtgctggtgatgtgcaccgttctgagccac
gatctggtcaacgatcccgatatcgtcgccatgatcgccgcttcggctgcgctgaccatt
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgggtcggtttcgcgcatggccaa
tatgtgctgaaccccgaaatcgcggatatggatcagctgcggggcaaccccgagcagcgt
ctggatctggtcgtcgccggcaccaaggacgccgtgatgatggtcgaatcggaagcctat
gagctgaccgaggaagagatgctgggcgcggtgaaattcggccacgagcagatgcagccg
gtcatcgacctgatcatcgacctggccgaagccgccgcgaaagagccgttcaacttccag
tcgcccgattacagcgcgctttatgcccgcgtgaaatcgctgggtgaggccgatatgcgc
gccgcctatgccatccgcgacaagggtgagcgtcgcgatgccatcgacgtcgccaaggcg
aaggtcatcgaaggtctgaccgaagaggaactggccgacgcgaatctgggctcggcgctg
aaaaagctggaatcgggcatcctgcgcggtgacatcatcaatggcggtgcccgcatcgac
ggtcgcgacaacaagaccgtccgcgccatcgacagcgaagtcggcatcctgccgcgcacc
cacggctcgtcgctgttcacccgtggcgagactcaggcgctggtcgtgaccacgctgggc
accggcgatgacgaacagatcatcgacgcgctgcacggcaatttccggtcgaacttcctg
ctgcactacaacttccccccctattcggtgggcgaggtcggtcgtgtcggcagccccggc
cgtcgcgaaatcggccatggcaagctggcatggcgtgcgttgcaggcggtgctgcccgcc
gcgacagatttcccctataccatccgcgtcgtgtccgagatcaccgaatcgaacggctca
agctcgatggcctcggtctgcggcggttcgctgtcgatgatggatgcgggcgtgccgctg
aaggcgccggttgccggtgtcgcgatgggtctgatcctggaagacgacggccgctatgcg
gtgctgaccgacattctgggtgacgaggatcacctgggcgacatggacttcaaggtggcc
ggaaccgccgaggggatcacctcgctgcagatggacatcaaggtcgcgggcatcacgccc
gagatcatggagcaggcgctggcgcaggccaaggacggccggatgcatatcctgtccgag
atgtcgcatgccctgaccgaaggccgccgcgagttttccgcccatgccccgcgcatcgaa
acgatgcagatcccgaccgacaagatccgcgaagtgatcggctcgggcggcaaggtgatc
cgcgagatcgtggagacctcgggcgcgaaggtcgatatcagcgacgacggcaccatcaag
atcgcctcggccaatgccgattcgatcaacaaggcctatgacatgatatattcgatcgtg
gccgagccggaagagggcaaggtctataccggcaaggtcgtcaagctggtcgatttcggc
gccttcgtgaacttcttcggcaagcgcgacgggctggtccatgtgtcccagatcgccaac
aagcgtctgggccatccgaacgagctgctgaaggaaggccaggaggtgaaggtcaagctg
ctgggcttcgacgaccgtggcaaggtgcgccttggcatgaagatggtcgatcaggagacc
ggcgaggaaatcaccgagaagaaagaggaatcggccgaaggctga
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