Paracoccus alcaliphilus: JHW40_09875
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Entry
JHW40_09875 CDS
T08960
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
palp
Paracoccus alcaliphilus
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
palp03016
]
JHW40_09875 (rnd)
Enzymes [BR:
palp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JHW40_09875 (rnd)
Transfer RNA biogenesis [BR:
palp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JHW40_09875 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WCR19914
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All DBs
Position
1928627..1929796
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AA seq
389 aa
AA seq
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MITITETEALARFCHTAKRAPYVTVDTEFLRERTYWSKLCLIQLALPPVSDADNQGGEAV
LVDPLAPGLSLEPLYDLFRHEATVKVFHAARQDLEIFFHDAGLFPKPLFDTQVAAMVCGF
GEQVGYETLVRKIARASLDKSSRFTDWSRRPLSDAQKSYALADVTHLRSIYEFLAAELRR
NDRESWLAEELAVLENPETYITRPEEAWMKVRTRTNSPRFLAILRELARFRESYAQERDI
PRTRVYKDDAMIELASTKPASEADLGRSRLLLRDARRGDIANGILAAVQLGQETKDLPKP
KAEEPGKPGNAALSDLLRVLLKAKADAAGVAPKLIASSSDLDAIATGDREVPALKGWRAE
VFGNDALRLAAGEIALSARGGAVRVVPAD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atcatcacgatcaccgaaaccgaggctctggcgcgtttctgtcacacggcaaaacgcgcg
ccctatgtcaccgtcgataccgaattcctgcgcgagcggacctattggtccaagctgtgc
ctgatccagctggcgttgccgccggtctcggatgccgacaatcagggcggcgaggccgtg
ctggtcgatccgctggcccccggactgtcgctggaaccgctatatgatctgttccggcac
gaggccacggtcaaggtgtttcacgccgcgcggcaggatctggaaatcttcttccacgat
gccgggctgtttcccaagccgctgttcgacacgcaggttgccgccatggtctgcggcttt
ggcgagcaggtgggatacgagacattggtgcgcaagatcgcgcgggccagtctggacaaa
tcctctcgctttaccgactggtcgcgcagaccgctgtcggatgcgcagaaatcctatgcg
ctggcggatgtgacgcatctgcgttcgatctatgaattccttgcggccgagctgcgccgg
aatgatcgcgaaagctggctggccgaggaactggcggttctggagaaccccgagacctat
atcacccggcccgaggaagcctggatgaaggtgcgtacccgcaccaattccccgcgcttt
ctggcgatcctgcgcgaactggcccgctttcgcgaaagctatgcgcaggaacgcgacata
ccccgcacgcgcgtttacaaggacgatgcgatgatcgagctggcctcgaccaaaccggcc
tccgaggccgatctgggccggtcgcgcctgttgctgcgcgatgcgcgccggggcgatatc
gccaatggcattctggccgccgtccagctggggcaagaaaccaaggacctgcccaaaccc
aaggcggaagagccgggcaagccgggcaatgcggcgctgtcggatctgctgcgcgtgctg
ctgaaggccaaggcggatgcggccggggtggcgcccaagctgatcgcctcgtcctcggat
ctggatgcgatcgcgaccggagaccgtgaggttccggcgctgaagggctggcgggccgag
gtgttcggcaatgacgcgctgcggctggcggcgggcgaaatcgccctgtcggcgcgcggc
ggtgccgtgcgggtcgtgccagcggactag
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