Paracoccus alcaliphilus: JHW40_10970
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Entry
JHW40_10970 CDS
T08960
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
palp
Paracoccus alcaliphilus
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palp03032
]
JHW40_10970 (topA)
03400 DNA repair and recombination proteins [BR:
palp03400
]
JHW40_10970 (topA)
Enzymes [BR:
palp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JHW40_10970 (topA)
DNA replication proteins [BR:
palp03032
]
Prokaryotic type
DNA Topoisomerases
JHW40_10970 (topA)
DNA repair and recombination proteins [BR:
palp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JHW40_10970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WCR16929
LinkDB
All DBs
Position
complement(2149937..2152642)
Genome browser
AA seq
901 aa
AA seq
DB search
MPVVVVESPAKAKTIEKYLGGDYRVLASFGHVRDLPPKDGSVDPADDFAMKWEVASDSRK
HLKAIKDALKDDPNLILATDPDREGEAISWHLLEALAPALKKGSEVNRVTFNAITKAAVT
EAMANPRQIDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRVIVDRE
MEIEAFKAREYWSVHARLATPDGNEYDAQLVSLAGSRLERFDLPTAEKAAMAVSAVSSRD
LHVTSVAAKPASRNPWPPFMTSTLQQEASRKLGMGAKACMSTAQRLYEAGLITYMRTDGI
DMAPEAVMAARDAIKARFGGNYVPKSPRMYKNKAKNAQEAHECIRPTDMMLSPDKLKVSA
EDQRKLYDLIWKRTIASQMEAARMERTTVEIASPDNQVGLRATGQVMLFDGFLRVYDQGR
DDDEGEDSARLPAITQGEAATLVGRAFDAEFAKAGEKDTPLPDAPAGQRAAPGLLMNDAA
STAARQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKDKNRLIPEDK
GRLVTVFLVEYFPRYVSYDFTADLENELDEISAGDLMWRDVLGRFWKDFSKALEGTSELR
ITEVLEAIDEALAPHLYPPRADGGDPRVCPVCGAGRLNLKTARSGGAFIGCTNYPECRYT
RPLSAPDGEQPVGDRVLGQDAGDEISLKTGRFGPYVQRGEATAEVPKPPRASIPKGWDAG
SIDLEKALQLLSLPRPVGPHPDDGVLIEAGIGRFGPYVKHGSKYANLPDVEEVFTVGMNR
AVEVLAAKQMRGRGATAAPLKELGNHPDGGAIQVMNGRYGPYVKWEKINATLPRDLSPED
ITLERALELITEKASKTKPKAGTRKTASKAAGAKKTTKKTTAKKPAAKKTAAKAKSAGTD
A
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttgtcgtcgtcgaatccccggccaaggccaaaaccatcgagaaatatctcggc
ggcgattaccgtgttcttgccagtttcggccatgtccgcgaccttccgcccaaggatggc
agcgtcgatcccgccgacgatttcgcgatgaaatgggaggtggcaagcgacagcagaaag
cacctgaaggcaatcaaggacgcgctgaaggacgatccgaacctgattctggccaccgac
cccgaccgcgagggcgaagccatcagctggcacctgctggaggcgctggccccggcgctg
aaaaagggcagcgaggtcaaccgcgtcaccttcaacgccatcaccaaagccgccgtgacc
gaggcgatggcgaacccgcgtcagatcgaccagccgctggtcgatgcctatctggcccgg
cgcgcgctggattatctggtcggattcaacctgtcgccggtgctgtggcgcaagctgccg
ggcgcgaaatcggcgggtcgggtgcaatcggtttgcctgcgcgtgatcgttgaccgggaa
atggagatcgaggccttcaaggcccgtgaatactggtctgtccatgcccgtctggcgacg
ccggacggcaatgaatacgatgcgcagttggtctcgctggcagggtccaggctggaacgg
ttcgacctgcccacggcggaaaaggccgcaatggcggtcagcgccgtctccagccgtgat
ctgcatgtgaccagcgtcgccgccaaacctgccagccgcaacccctggccgcccttcatg
acctcgaccctgcaacaagaggcatcgcgcaagctgggcatgggcgccaaggcctgcatg
tccacagcgcagcggctgtatgaggccgggctgatcacctatatgcgcactgacggcatc
gacatggcgcccgaggcggtgatggccgcccgcgacgcgatcaaggcccgtttcggcggg
aattacgtgccgaaaagcccgcgcatgtacaagaacaaggccaagaacgcgcaggaagcc
cacgaatgtatccgcccgaccgacatgatgctgtcgcccgacaagctgaaggtcagcgcc
gaggatcagcgcaagctctatgatctgatctggaaacgcaccatcgccagccagatggaa
gccgcaaggatggagcgcaccacggtcgagatcgccagccccgacaatcaggtcggcctg
cgcgcaaccggtcaggtgatgctgttcgacgggttcctgcgtgtctatgatcagggtcgc
gacgatgacgaaggcgaggacagcgcccgcctgcccgccatcacccagggcgaggccgcg
acgctggtcggccgggccttcgacgccgaattcgccaaggccggcgagaaggacacccct
ctgcccgacgcgcccgccggtcagcgcgccgcgccgggtctgctgatgaacgacgccgcc
tcgaccgccgcgcggcagcatttcacccagcccccgccgcgctataccgaggccacgctg
gtcaagcggatggaagagctgggcatcggccgcccctcgacctatgccagcatcgtcacc
acgattcaggatcgcgaatatgtccgcaaggacaagaaccgcctgatccccgaggacaag
ggccggctggtcacggtgtttctggtcgaatatttcccgcgctatgtcagctatgacttc
accgccgacctggaaaacgaactggacgagatcagcgccggcgacctgatgtggcgcgat
gtgctaggccggttctggaaggacttctcgaaggcgctggaaggcacgtcggagctgcgc
atcaccgaagtgctggaggccatcgacgaggcgctggccccgcatctttatccgccgcgc
gccgatggtggcgatccgcgcgtctgcccggtctgcggcgcgggccgtctgaacctgaag
acggcacggtccggcggggccttcatcggctgcacgaattatcccgaatgccgctatacc
cgcccgctgtcggcccccgatggcgaacagccggtgggcgaccgggttctgggtcaggac
gcgggcgacgagatcagcctgaaaaccgggcgcttcggcccctatgtgcagcggggcgag
gcaacggcggaggttccgaaaccgccccgcgcctcgatcccaaagggctgggacgcgggc
agcatcgatctggaaaaggcgctgcaactgctgtccctgccccgcccggtcgggccgcat
cccgatgacggcgtgctgatcgaggccgggatcgggcgcttcggcccctatgtgaaacac
ggctcgaaatacgccaacctgcccgatgtcgaagaggtctttaccgtcggcatgaaccgc
gcggtcgaggttctggccgccaagcagatgcgaggtcgcggggccaccgccgcgcctttg
aaggaactgggcaaccatcccgatggcggcgcgattcaggtgatgaatggccgctatggc
ccttatgtcaaatgggaaaagatcaacgccaccctgccgcgcgacctgtcgcccgaagac
atcacgctggagcgggcgcttgaactgatcacagaaaaggcctccaagacgaagccgaaa
gcgggcacccgaaaaaccgccagcaaggctgcgggcgccaaaaagaccaccaagaagacg
acggcgaagaagcctgccgccaaaaagacggcggccaaggccaagtctgccggaaccgac
gcctaa
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