Pseudonocardia alni: PaSha_14955
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Entry
PaSha_14955 CDS
T11230
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palq Pseudonocardia alni
Pathway
palq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PaSha_14955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palq03021
]
PaSha_14955
03400 DNA repair and recombination proteins [BR:
palq03400
]
PaSha_14955
Enzymes [BR:
palq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PaSha_14955
Transcription machinery [BR:
palq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PaSha_14955
DNA repair and recombination proteins [BR:
palq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PaSha_14955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WFG44541
LinkDB
All DBs
Position
3012228..3016139
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATAEGIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHNDMSTLENEMSVERRRVEQTRDADLEARAQKLEAD
IAELEAEGAKGDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLDVQQLIADESI
YRELYDRYGDYFTGAMGAEAIQKLLENFDIPAEAEKLREIIRSGKGQKKLRALKRLKVVA
AFQTTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLREDAHGAGN
HYGSAAEAIMAYDRKVLHLQAPIKIRLPQVTPTPGTDAETVTEDGVWTAETTLGRVLFNE
LLPADYPFVNEPLPKKRQATIVNELAERYSMTEVAQVLDRLKDAGFYWATRSGVTISIAD
VLVPPAKAGILEEYEAKADQINKRYQRGALSHQERNDEMVKIWSRATEEVAKAMEQNFPE
DNPIPTIVQSGAAGNMTQIRQLAGMKGLVANPKGEFIPRPIKASYREGLSVLEYFISTHG
TRKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERAIPMAVTEETSDGRFIPHRY
LRTSVYARTSGEEITAADGTVLVRKGDDLGDAVLDALVAAGVKTVRVRSALTCASATGIC
GMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFKQGGVAGDDITTGLPRVTEL
FEARVPRGKAPIADVDGRIRIEDGDRFWKITLIPDDGGEEIVYEKLSKRQWLGMTTVDGT
ERPLADGDHVTVGQLLLEGMADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHIE
VIVRQMLRRVTIIDSGATEFLPGALAERGEFESENRRVVAEGLEPASGRPVLMGITKASL
ATESWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARAAAYALPSYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgcatcggcctggccaccgccgagggcatc
cgccagtggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacgcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgcggcgtacgtgatcacctcggtgaac
accgaactgcggcacaacgacatgtccacgctcgagaacgagatgagcgtggagcgccgt
cgggtcgagcagacccgcgacgccgacctcgaggcccgcgcccagaagctcgaggccgac
atcgccgagctcgaggccgagggtgccaagggcgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgccagctgcgcgaccgtgcccagcgcgagctggaccggctcgac
gagatctggacgacgttcacgaagctcgacgtccagcagctcatcgcggacgagtccatc
taccgcgagctctacgaccgctacggcgactacttcaccggtgccatgggtgccgaggcg
atccagaagctgctggagaacttcgacatcccggccgaggccgagaagctgcgcgagatc
atccggtccggcaagggccagaagaagctgcgtgcgctcaagcgcctgaaggtcgtcgcg
gcgttccagaccaccggcaactcgccgatgggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctcggacctg
aacgacctgtaccgccgggtcatcaaccggaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggagtccgtcgacgcg
ctgttcgacaacggccgtcgtggccggccggtgaccggtccgggcaaccgcccgctcaag
tcgctgtccgacctgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcaccccgtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgcgtgctgatgctg
tcgtcgaacaacatcctgtccccggcgtcgggtcgcccgctggcgatgccgcgtctggac
atggtcacgggtctgtaccacctgacccgtctccgcgaggacgcccacggcgccgggaac
cactacggctccgcggccgaggcgatcatggcctacgaccgcaaggtcctccacctgcag
gcgccgatcaagatccggctcccgcaggtcaccccgaccccgggcacggacgccgagacc
gtgaccgaggacggcgtctggaccgcggagaccacgctcgggcgggtgctgttcaacgag
ctcctgccggcggactacccgttcgtcaacgagccgctgccgaagaagcgccaggccacg
atcgtcaacgagctggccgagcgctactcgatgaccgaggtcgcgcaggtcctggaccgg
ctgaaggacgcgggcttctactgggccacgcgctccggcgtcacgatctcgatcgcggac
gtgctggtcccgccggccaaggcgggaatcctcgaggagtacgaggcgaaggccgaccag
atcaacaagcgctaccagcgtggtgccctgtcgcaccaggagcgcaacgacgagatggtc
aagatctggagccgggcgaccgaggaggtcgccaaggcgatggagcagaacttccccgag
gacaacccgatcccgacgatcgtgcagtccggggccgcgggcaacatgacccagatccgc
cagctggcgggtatgaagggtctggtcgcgaaccccaagggcgagttcatcccgcgtccg
atcaaggcctcgtaccgtgagggcctgtcggtgctggagtacttcatctccacgcacggc
acccgtaagggtctggcggacaccgcgctgcggaccgcggactccgggtacctgacccgt
cgtctggtcgacgtgtcgcaggacgtcatcgtccgcgaggtcgactgcggcaccgagcgc
gccatcccgatggcggtcaccgaggagacgagcgacggtcggttcatcccgcaccgttac
ctgcgcacctcggtgtacgcccggacctccggcgaggagatcaccgcggcggacggcacc
gtgctggtccgcaagggcgacgacctcggcgacgccgtgctcgacgcactcgtcgcggcc
ggcgtcaagacggtccgggtccgctccgcgctgacctgcgcctcggccaccggtatctgc
ggcatgtgctacggccgctcgatggccaccggcaagctggtggacgtcggcgaggccgtc
ggcatcgtcgccgcacagtccatcggtgagcccggcacccagctgacgatgcgtacgttc
aagcagggtggcgtcgcgggtgacgacatcacgaccggtctgccgcgtgtcaccgagctg
ttcgaggcccgggtcccgcgcggcaaggcgccgatcgccgacgtcgacggccgcatccgc
atcgaggacggcgaccggttctggaagatcacgctgatcccggacgacggcggcgaggag
atcgtctacgagaagctgtccaagcggcagtggctcgggatgaccaccgtcgacggcacc
gagcgtccgctcgcggacggcgaccacgtgacggtcggccagctgctcctcgagggcatg
gcggacccgcacgaggtgctgcgtgtcatgggcccgcgtgaggtgcagctgcacctcgtg
cgtgaggtgcagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtcacgatcatcgactcgggtgcgaccgagttc
ctgcccggtgcactggccgagcggggcgagttcgagtccgagaaccgccgggtcgtcgcc
gagggtctggagccggcctccggccgtccggtcctgatggggatcaccaaggcctcgctg
gcgacggagtcgtggctgtccgcggcctcgttccaggagaccacccgcatcctcaccgat
gccgcgatcaacgggaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatcggt
aagctgatcccggccggtaccggcatcaaccggtaccgcaacatccaggtccagccgacc
gaggaggcccgcgcggccgcctacgcgctgccgagctacgacgacggctactacagcccg
gacgtcttcggcacgggcaccggtgccgcggtgccgctggacgactacgacttcggtcgc
gactaccgctga
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