KEGG   Pseudonocardia alni: PaSha_20230
Entry
PaSha_20230       CDS       T11230                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
palq  Pseudonocardia alni
Brite
KEGG Orthology (KO) [BR:palq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:palq03400]
    PaSha_20230
Enzymes [BR:palq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PaSha_20230
    5.6.2.6  RNA 3'-5' helicase
     PaSha_20230
DNA repair and recombination proteins [BR:palq03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PaSha_20230
SSDB
Motif
Pfam: DEAD Helicase_C Cas3-like_C_2
Other DBs
NCBI-ProteinID: WFG45385
LinkDB
Position
4120405..4122495
AA seq 696 aa
MSIETLAPGLGHHIVNTLGWRSLRPLQADAIEPVLRGDDAVLLAPTAGGKTEAAMFPLLT
AMEQQRWTGTSVLYVCPLKALLNNLLPRLQAYGGWLGRRVELWHGDVTPSARQRILTDQP
DVLLTTPESLEAMLVGNRVDHERFFAGLRAVVVDEVHAFAGDDRGWHLLAVLERLTGVCG
RPLQRIGLSATVGNPAELLEWLQGSGRGTRTSTVVAPQIGGPAAEADIELDYVGSVDNAA
TVLAALHHGEKRLVFCDSRALVEKLGTALRERGVTTFLSHASLSVDERRQAEAAFAEARD
CVIVSTSTLELGIDVGDLDRVVQINAPRTVASFLQRLGRTGRRPGTVRNCLFLALDKKSL
LWAAGLLRLWGTGYVEPVTAPPEPRHIVAQQLLALCLQQNSVGTELALDAWNGLHPFDHG
SRPILDHLLEEGFVDRDGELMGIGPAAEKRYGRRHFMGMTAVFTAPPQFRVFEGRREIGL
LDPALLTDQVEGPRLVLLAGRSWRVNWVDWTRQRCFVEADDRGGRARWNSGGIGGASFAL
TRSVRDVLLGDDPPVGLSGRAVDVLAEHRDTESYTVHPGGTLVVREGSDLRWWTWAGFRT
NATLASTLSELVDGTQRVNDVSIRIRGDVTREIWASATRDAGERLCLPDVDERALEGLKF
SDALPKRLAAATLAARLADLDGAARVLTEPVRFGSI
NT seq 2091 nt   +upstreamnt  +downstreamnt
gtgagcatcgagacgctggcgcccgggctgggccaccacatcgtcaacaccctcggctgg
cgcagcctgcgaccgctgcaggccgacgccatcgaaccggtcctgcgcggcgacgacgcc
gtgctgctcgcccccaccgcgggcggcaagaccgaggccgcgatgttcccgctgctcacc
gccatggaacagcagcgctggaccggcacctcggtgctctacgtctgcccgctcaaggca
ttgctcaacaacctgctgccgcgcctgcaggcctacggcggctggctcggccgccgcgtc
gagctctggcacggcgacgtcacaccgtccgcgcggcagcggatcctgaccgaccagccg
gacgtcctgctcaccacgcccgagtcgctggaagccatgctggtcggcaaccgcgtcgac
cacgagcggttcttcgccgggctgcgagccgtcgtcgtcgacgaggttcacgccttcgcc
ggcgacgaccgcggctggcacctcctcgccgtcctggaacggctgaccggcgtgtgcggc
cgccccctgcagcggatcgggctgtcggcaaccgtcggcaacccggccgagctgctggaa
tggctgcagggctccggacgcggcacccgcacctcgaccgtggtcgcgccgcagatcggc
ggcccggccgccgaggccgacatcgagctggactacgttggctcggtcgacaacgccgcc
accgtcctcgcggcgctgcaccacggtgagaagcggctggtgttctgcgacagccgggcg
ctggtggagaagctcggcaccgcgctgcgcgagcgcggagtgacgacgttcctctcccac
gcgtcgctgtcggtggacgaacgacggcaggccgaggccgcattcgccgaggcccgcgac
tgtgtgatcgtatcgacgtccacactggagctcggcatcgacgtcggcgacctcgaccgg
gtcgtccagatcaacgcaccgcgcaccgtcgcgtcgttcctgcagcggctcggccggacc
gggcggcggcccggcacggtccggaactgcctgttcctggccctcgacaagaagtcgctg
ctctgggcggccggcctgctacggctgtgggggaccggctacgtcgaacccgtcaccgcg
ccgcccgagccacggcacatcgtcgcccagcagctcctcgcgctctgcctgcagcagaac
tccgtcgggaccgagctcgcgctcgacgcctggaatggcctgcacccgttcgaccacggt
tcccggccgatcctcgaccatctgctcgaggaaggattcgtggaccgggacggcgagctg
atgggcatcgggccggccgcggagaagcggtacgggcgccggcacttcatggggatgacc
gcggtgttcaccgcaccgccccagttccgggtgttcgagggtcgccgcgagatcgggctg
ctcgatcccgcgctgctcaccgaccaggtcgaaggcccgcggctggtactgctcgccggg
cggagctggcgggtgaactgggtcgactggacccggcagcggtgcttcgtggaggccgac
gaccgcggtgggcgggcccggtggaacagcggcggcatcggcggggcgagtttcgcgctc
acccggtcggtccgcgacgtcctcctcggcgacgacccaccggtcgggctcagcggccgt
gccgtggacgtactcgccgagcaccgcgataccgagtcctacacggtccatcccggaggg
acgctcgtcgtccgggagggttccgacctgcgctggtggacctgggccgggttccggacg
aacgcgacgctggcgtcgacgctgtcggagctggtcgacgggacgcagcgggtcaacgac
gtgtcgatccggatccgcggggacgtcacacgggagatctgggcgtcggcgacgcgcgac
gcgggcgaacggctctgcctgcccgacgtcgacgagcgggcgttggagggcctgaagttc
tccgatgccctgccgaagcggctcgcggccgcgacgctcgctgcgcggttggcagacctc
gatggagccgcccgggtgctcaccgagccggtccggttcgggtcgatctga

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