Paenibacillus albicereus: HGI30_03015
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Entry
HGI30_03015 CDS
T07921
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palr
Paenibacillus albicereus
Pathway
palr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HGI30_03015 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palr03021
]
HGI30_03015 (rpoC)
03400 DNA repair and recombination proteins [BR:
palr03400
]
HGI30_03015 (rpoC)
Enzymes [BR:
palr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HGI30_03015 (rpoC)
Transcription machinery [BR:
palr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HGI30_03015 (rpoC)
DNA repair and recombination proteins [BR:
palr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HGI30_03015 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QJC50655
UniProt:
A0A6H2GTD7
LinkDB
All DBs
Position
698843..702466
Genome browser
AA seq
1207 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFHAGMGAEAVKKLLQ
DIDVERELDQLKEELRTAQGQRRNRAIKRLEVIEAFRHSGNKPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEALGSGSVFGTVNEAISAYQRGIVSLHARIFIP
AKVLRKDAFTEEQNRSLISTTVGKVIFNEIFPSSFPYINEATKTNLMDGTPDKYFVYEKG
ADLNSFLENVPQMGAVGKEYLGLLIAECFRLYHTTRTSIILDKIKELGFTYSTRAGITVA
VSDVIVPPEKVEILKESDEKVKIVTNQYRRGLITNEERYDRVIEIWSKTKDQITDILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYYIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGITVSKIQDGKEVIEDL
FDRIEGRYSFETVRHPETGEVIVARNDLIDATKADAIVNAGIEKLQIRSVLSCRARHGVC
KICYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISELDGVVKSIRETKDRREIEVQGEAESKVYPVSYGSRIRVIEGQHLEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIKQMLRKIRI
VDAGDTKLLPGAFVDVHEYEAANREVLLSGREPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIRFVGQEDEIETTGEEVG
ESVAVES
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtgaacaacttcgagtacatgaagatcggcctcgcatcgccggaaaagatt
cgctcttggtcccgcggagaagtcaagaagccggagaccattaactataggacgctcaag
ccggagaaagaaggtcttttctgcgagaagatcttcggaccgaccaaggactgggaatgc
cactgcggcaagtacaagcgcgtccgctacaaaggcgtcgtctgcgaccgctgcggcgtc
gaagtgacgcgcgccaaggtgcgccgcgagcgcatgggccatatcgagctcgccgctccg
gtatcccacatctggtacttcaaaggcatcccgagccggatggggctggcgctcgacatg
tcgccccgttcgctcgaggagatcatctacttcgccagctacgtcgtcaccgatccgggc
gagacgccgctggagaagaagcagctgctctccgagaaggaataccgcagctaccgcgag
aagtacggctacggcttccatgccggcatgggcgccgaggcggtcaagaagctgcttcag
gacatcgacgtggaacgcgagctggaccagctgaaggaagagctgcgcacggcccaaggc
cagcgccgcaaccgcgccatcaagcgcctggaagtcatcgaggcgttccgccactccggc
aacaagccggactggatgatccttgacgtgctcccggtcatcccgccggagcttcgtccg
atggtccagctcgacggtggacgcttcgcgacctccgacctcaacgacctgtaccgccgg
gtcatcaaccgcaacaaccgtctgaagcgcctgctcgacctgggcgcgccggacatcatc
gtgcagaacgagaagcggatgctgcaggaagccgtcgatgccctcatcgacaacggccgc
cgcggccgcccggtcaccggaccgggcaaccgtccgctcaaatcgctcagccacatgctg
aagggcaagcaaggccgtttccggcagaacctgctcggcaagcgcgtcgactactccggc
cgttcggttatcgtcgtcggcccgaacctgaagatgtaccagtgcggcctcccgaaagag
atggcgctggagctgttcaagcctttcgtcatgaaggagctcgtgaacaaaggcctcgcg
cacaacatcaagagcgcgaagcgcaaagtcgagcgcgtcagcgccgaggtctgggatgtg
ctcgaggaagtcatcaaggagcatccggtcctgctgaaccgcgcccctacgcttcaccgt
ctcggcatccaggcgttcgagccgatccttgtcgaaggcaaggcgatcaagcttcatccg
ctcgtatgtacggcctacaacgccgacttcgacggcgaccagatggccgtccacgtgccg
ctgtccgccgaggctcaagccgaagcgcgcctgctcatgctggccgccggcaacatcctc
aacccgaaggacggcaagccggtcgtcacgccttcgcaggatatggtcctgggctccttc
tatctgacgatggacaacaaggaagctctcggctccggctccgtgttcggcacggtcaac
gaagcgatctccgcgtatcagcgcggcatcgtctcgctgcatgcgcgcatcttcattccg
gccaaggtgcttcgtaaggacgccttcacggaagagcagaaccgctcgctcatctcgacg
acggtcggcaaggtcatcttcaacgagatcttcccgagctcgttcccgtacatcaacgag
gcgaccaagaccaacctgatggatggaacgccggataaatatttcgtctacgaaaaaggc
gcggacctgaactcgttcctggagaacgtgccgcagatgggcgctgtcggcaaagagtat
ctcggcctgctcatcgccgaatgcttccgcctgtaccatacgacgcggacgtccataatc
ctcgacaagatcaaggagcttggcttcacctactccacccgcgcgggcatcacggtcgcc
gtctccgacgtcatcgtgccgccggagaaggtcgagatcctcaaggaatccgacgagaag
gtcaaaatcgtcacgaatcagtaccgccgcggcctgattacgaacgaagagcgctacgac
cgcgtcatcgagatttggagcaagacgaaggaccagatcacggatatcctcatgaaatcg
atggaccgctacaactccatcatgctcatggtcgattccaaggcgcggggtaacaaatcg
cagattacccagctcggcggcatgcgcggcctgatggcgaacccgtccggacggatcatc
gagctcccgatcaagtcgaacttccgcgaaggcctgaccgtccttgagtactacatctcg
actcacggcgcgcgcaaaggtctcgccgatacggctcttcgtaccgctgactcgggctac
ctgacccgtcgcctcgtcgacgtcgcgcaggacgtcatcgtccgcgaggacgattgcggc
acggacaaaggcatcaccgtctccaagatccaggacggcaaggaagtcatcgaggacctg
ttcgaccgcatcgagggccgctactcgttcgagaccgtccgccatccggagacaggcgaa
gtcatcgtcgcccgcaacgatctgatcgatgcgacgaaagccgatgcgatcgtcaacgcc
ggcatcgagaagctgcagatccgctccgtgctgagctgccgcgcccgccacggcgtctgc
aagatctgctacggccgcaacctggcgaccggcaagcatgtcgagatcggcgaagcggtc
ggcatcatcgcggcgcaatcgatcggcgagccgggaacccagctcacgatgcgtacgttc
cacaccggcggcgttgccggagacgacatcacgcaaggtctgccgcgtatccaggagctg
ttcgaggcccgcaatccaaaaggccaagcgatcatcagcgagctggacggcgtcgtcaag
agcatccgcgagacgaaggaccgccgcgaaatcgaggttcaaggcgaagccgagtcgaaa
gtctacccggtcagctacggttcccgcatccgcgtcatcgaaggccagcacctggaagcc
ggcgacgagcttaccgacggctccatcgatccgaaggaaatgctgcgcatcaaaggcatc
cgcggggtacagaactacatcctgcaggaagtccagcgcgtttaccggaaccagggcgta
gaaatcaacgacaagcacgtcgaggtcatgatcaagcagatgctccgtaaaatccgtatc
gtcgatgcgggcgacacgaaacttctgccgggagccttcgtcgacgtgcacgaatacgag
gcagccaaccgcgaggtgctgctgtccggccgcgagccggcggtcgccaagccagtgctg
ctcggcatcaccaaagcctccctggagacagactccttcctctccgcagcttccttccag
gagacgacccgcgtccttaccgacgccgccatcaaaggcaaggtcgaccagctgcttgga
ctcaaggagaacgtcatcatcggcaagctgattccagcgggaacgggcatgaaccggtac
cgcagcatccgcttcgtcggccaggaagacgagatcgagacgaccggcgaggaagtcggc
gagtccgtagcggtcgagtcttaa
DBGET
integrated database retrieval system
