KEGG   Paenibacillus albicereus: HGI30_22280
Entry
HGI30_22280       CDS       T07921                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
palr  Paenibacillus albicereus
Pathway
palr02020  Two-component system
palr02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:palr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HGI30_22280 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    HGI30_22280 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:palr03021]
    HGI30_22280 (rpoN)
Transcription machinery [BR:palr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HGI30_22280 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID DUF6471 HTH_17 Sigma70_r4 HTH_3 HTH_Tnp_4 HTH_IclR HTH_Tnp_ISL3 LacI HTH_23 MarR_2 HTH_38 LEM HTH_Crp_2
Other DBs
NCBI-ProteinID: QJC53982
UniProt: A0A6H2H2U1
LinkDB
Position
complement(5000810..5002141)
AA seq 443 aa
MPGPVLQPQALLRQEQRQKLALTQQMRQSLALLALPAAELDRAVRELAADNPLLEIREPA
ASRRAGGRGDASAADPLERAAAAPPTLEAELLAQLRLSGAPAPQRRAAAWLAGNLDESGW
LALPLAEAAERLRLSAAEAESALRLLQSLQPAGIGARDLRECLLLQLDREPEPAPGAREL
AARWLPQLAARRWEEIAAGTGLGREQLELARQALLRLDPRPGQRLAGAAAIRTQAVVPDA
LVRIAADGELLVELAASWEPRLSLADTGSGPLAAVARGHEAYAYVEGCRRAARALIGGLA
QRRETLARVVRAVFEEQAAFLEGGWPALRPLTLADVALRLGVHESTVSRAVSGKHVRTPL
GTFPLKAFFSAALGRGGAAEEVSAAAAKQRLAELVAAECRERPLSDQQLAERLAELGIPL
SRRTVAKYRGELRIPSSSSRRGG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgccgggtcccgtcctgcagccccaggcgctgctccgccaggagcagcggcagaagctc
gcgctcacgcagcagatgcgccagtcgctggcgctgctcgcgctgcccgcggccgagctt
gaccgcgccgtgcgcgagctcgccgcggacaatccgctgctcgagatccgcgagcccgcg
gcctcgcgccgcgcgggcggccgcggcgacgcctcggccgccgacccgctcgagcgcgcc
gcagccgcgccgcccacgctcgaagccgagctgctcgcgcagctgcggctgagcggcgcg
cccgcgccgcagcgccgcgccgccgcctggctcgccggcaacctcgacgagagcggctgg
ctggcgctgccgctcgcggaagcggcggagcggctgcgcctatccgccgcagaggccgaa
tcggcgctgcggctgctgcagtcgctgcagccggccggcatcggcgcgcgggacctgcgc
gaatgcctgctgctgcagctggaccgggagccggagccggctcccggggcgcgcgagctc
gccgcgcgctggctgccccagctggcggcccgccgctgggaagagatcgcggccggcacc
ggccttggccgcgagcagctcgagctggcgcgccaagcgctgctgcgcctcgacccgcgg
cccggccagcggctggcgggcgcggcagcgatccggacgcaggcggtcgtgcccgacgcc
ctcgtccggatcgccgcagacggcgagctgctcgtcgagctggccgcctcctgggagccg
cggctgtcgctcgccgataccggctccggcccgctcgcggccgtcgcccgcggccacgag
gcttacgcctacgtggagggctgccgacgcgcggcgcgcgcgctcatcggcgggctggcg
cagcggcgggagacgctcgcgcgggtcgtgcgcgccgtcttcgaggagcaggccgccttc
ctggaaggcggctggccggcgctgcggccgctcacgctcgcggatgtggcgctgcgcctc
ggcgtgcacgaatcgaccgtgagccgcgccgtctccggcaagcatgtgcggacgccgctc
ggcacctttccgctgaaggcatttttcagcgccgcgctcggtcggggcggagcagcggag
gaggtgtcggccgccgccgccaagcagcggctcgccgagctcgtcgcggctgagtgccgc
gagcggccgctgtccgaccagcagctcgcggagcggctggcggagctcggcatcccgctg
tcgcggcgcaccgtcgccaagtatcggggcgagctgcgcatccccagctcctcctcgcgg
cggggcggctga

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