Paenibacillus albicereus: HGI30_22555
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Entry
HGI30_22555 CDS
T07921
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palr
Paenibacillus albicereus
Pathway
palr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGI30_22555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palr03019
]
HGI30_22555
Enzymes [BR:
palr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGI30_22555
Messenger RNA biogenesis [BR:
palr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGI30_22555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJC54029
UniProt:
A0A6H2H359
LinkDB
All DBs
Position
complement(5070513..5071988)
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AA seq
491 aa
AA seq
DB search
MKFTDLKLISPILKALEKESYTEPTPIQAQAIPAALEGRDVLGCAQTGTGKTAAFSIPII
QRLSSQGGKPQGKRRIRSLILTPTRELAIQIEDNIRAYSQFTDIRCFSIVGGVSQRAQEI
QLARGMDILIATPGRLIDLINQKHADLQHVEILVLDEADRMLDMGFINDVKKIMARIPAK
KQTLFFSATMPPEISRLVDSLLHDPVTVEITPVSSTVDRIDQSVYFVDKDNKPQLLIHLL
RDRSIESVLVFTRTKHGADRVVRVLTKAGITAQAIHGNKSQNARQAALGNFKSGATRVLV
ATDIAARGIDIDELAHVIQFNLPNIPETYVHRIGRTGRAGKSGTAISFCEDEEVPYLKDI
EKLTKKKVPVVREHPYPMAAGEPTLPSLTQSQGGGRQGGGSSSARQGGRPQQGQGGSRQG
DGGGNARQGGRPQPGGQAQQRPAAGGAEAQQPGTAGGGRKRKRRRGGSGRGPASAGTAPS
AQGARGGQPRG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaccgatttgaagctgatttccccgattctcaaagcgcttgaaaaagaaagc
tacaccgagccgacgccgatccaggcgcaggccatcccggcggccctcgagggccgcgac
gtgctcggctgcgcgcagaccggcaccggcaagacggcggccttttcgattccgatcatc
cagcggctgagcagtcagggcggcaagccccaaggcaagcgccgcatccgctcgctcatc
ctgacgccgacgcgcgagctggcgatccagatcgaggacaacatccgcgcgtacagccag
ttcaccgacatccgctgcttctcgatcgtcggcggcgtgtcccagcgggcgcaggagatc
cagctggcgcgcggcatggacatcctgatcgcgacgccgggccgcctcatcgacctcatc
aaccagaagcacgccgacctgcagcatgtcgagattctcgtgctcgacgaggccgaccgc
atgctcgacatgggcttcatcaacgacgtcaagaagatcatggcccgcatcccggccaag
aagcagacgctgttcttctcggccacgatgccgccggagatcagccgcctcgtcgactcg
ctgctccatgatccggtcacggtcgagatcacgccggtgtcctcgacggtggaccggatc
gaccagtccgtctacttcgtcgacaaggacaacaagccgcagctgctcatccacctgctg
cgcgaccgctcgatcgagtcggtgctcgtcttcacccgcaccaagcacggcgcggaccgc
gtcgtgcgcgtgctgaccaaggccggcatcacggcccaggcgatccacggcaacaagtcg
cagaacgcccgccaggcggcgctcggcaacttcaagagcggcgcgacgcgcgtgctcgtc
gcgaccgacatcgcggcgcgcggcatcgacatcgacgagctggcgcatgtcatccagttc
aacctccccaacatcccggagacgtacgtgcaccggatcggccgcacgggccgcgccggc
aagagcggcacggcgatctcgttctgcgaggacgaggaggttccatacctcaaggacatc
gagaagctgacgaagaaaaaggtgccggtcgtgcgcgagcatccgtacccgatggccgcc
ggcgagccgacgcttccgtccctgacgcaaagccagggcggcggccgtcaaggcggcggc
agcagcagcgcgcgtcaaggcggtcgtccgcagcaaggccaaggcggttcccgccaaggc
gacggcggcggcaacgcacgtcagggcggacgccctcagccgggcggccaggcgcagcag
cgtcctgcggccggcggcgcggaggcgcagcagccgggcacggccggcggcgggcgcaag
cgcaagcgccggcgcggcggctccggccgcggaccggcttccgccggcaccgctccgtcc
gctcaaggcgcgcgcggcggccagcctcgcggctag
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