Paracoccus albus: PAF20_05875
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Entry
PAF20_05875 CDS
T09266
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pals
Paracoccus albus
Brite
KEGG Orthology (KO) [BR:
pals00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pals03019
]
PAF20_05875 (hrpB)
Enzymes [BR:
pals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAF20_05875 (hrpB)
Messenger RNA biogenesis [BR:
pals03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAF20_05875 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WBU61427
LinkDB
All DBs
Position
complement(1179569..1181971)
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AA seq
800 aa
AA seq
DB search
MTERLPIEDALPALRDAMKAGGCAVLVAPPGAGKTTRVPLALMDQVSGKILMLEPRRLAA
RAAAERLAEGLGQKPGGDVGFRMRGESVAGRRIEVVTEGILTRMLQSDPSLEGIGCVIFD
EFHERSLNADLGLALAWEARGALRPDLQLLVMSATLDAGPVAAMLGDAPVIESMGRAFPV
ETRYLPRPLPAGHRLDIEAARLITQAEAETRDDPGGTILAFLPGEGEIRRVAAALSDLPC
EVAPLFGAMDFKAQRAALSPPRGHRKIVLATAIAETSLTIPGVRVVVDAGRARRARFDPG
SGMSRLVTERVSRAEAEQRRGRAGRVAPGICYRMWARAEEGALPGFAPPEIAVADLTGLA
LELANWGSDGADLAFLTPPPDAAMAEARALLRDLGALDAEGRITPHGRDLAALPVHPRLA
HMLAVAGRNAAPLAALIEDRDPLRGAGADLSLRLRALQESSRHGPARGALDRIRQEGKRL
ARLVPDTAAMSPGAMAALAYPDRIGMRRPGDQPRYLLSGGRGAVLTEGDAMGAEPFLVAT
DLDGQGRESRIRLALPITEDEIRDAFADRIETLEAVEWSPRDGRILARERDRLGALVLAE
RPLPKPAEDAIARAAWEGLQSEGLTWSPKAARLRARIRLLPEGPDVSDEELLTDGDWLLP
FLGKVRNRGDLRGLDLTQPLMNLLGWDGQQALNRLTPAHFTTPLGRQVPIDYDAETPSVE
LRLQEVFGLTRHPMIGNQPLRMTLLSPGQKPVAVTTDLPGFWAGSYADVRKDMRGRYPKH
PWPEDPTQADPTLRAKPRGS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacgcctgcccatagaagacgccttgcccgcccttcgcgatgcgatgaaggcc
ggtggctgcgccgtgctggtcgccccgccgggtgcgggcaagacgacccgcgttccgctg
gcgctgatggatcaggtgtcaggcaagatcctgatgctggaaccgcgccgccttgccgcc
cgcgccgccgccgaacggctggccgagggattgggccaaaagccgggcggggatgtcggt
ttccggatgcgtggcgaatccgttgccgggcgacggatcgaggtggtgaccgaaggtatc
ctgacgcggatgctgcaatccgacccttcgctggaggggatcggctgcgtgatcttcgac
gaatttcatgaacgcagcctgaatgccgatctgggactggcgcttgcgtgggaggcgcgc
ggtgccctgcgccccgatctgcaattgctcgtgatgtctgcgactctggatgcaggcccc
gtcgccgctatgctgggcgatgcgcctgtcatcgaaagcatgggccgcgcctttccggtt
gagacacgctatctgccgcgcccgctgcccgctggtcatcgtctggatatagaggccgcc
cggctgatcacgcaagccgaagcagagacacgcgatgatcccggcggcacaatccttgca
ttcctgccgggagagggcgaaatccggcgcgttgctgccgcgctgtcggatctgccatgc
gaggtcgcgccgcttttcggtgcgatggacttcaaggcgcaacgggcggcgctttcaccg
ccgcgcgggcatcgcaagatcgtgctggcgacggcgattgcggaaacctctctgaccatt
cccggtgttcgcgtggtggtggatgccgggcgggcgcgacgggcgcgcttcgatcccgga
tcaggcatgtcgcgattggtgacagagcgcgtcagccgggcagaggcagaacagcgccgt
ggccgcgccggtcgtgtcgcgccgggcatctgctatcgcatgtgggcgcgggccgaggaa
ggagccctgcccggtttcgcaccacccgaaatcgccgttgcagacctgacaggactggcg
ttggagcttgcaaattggggcagcgacggggccgatctggcctttctgacgccgcccccc
gatgccgcgatggcagaggcgcgggcgctgctgcgcgatctgggtgcgctagacgcagaa
ggccggatcaccccgcatggccgcgatctggcggcgctgccggttcacccacgcctcgca
catatgctggcggtcgcgggacgcaatgcagcgccgctggctgcgctgatcgaagaccgc
gatccgcttcgcggtgccggggccgatctgtcgctgcggctgcgcgccttgcaggaatcc
tctcgccacggtcccgcacggggcgcattggaccgcatccggcaggagggtaagcggctc
gctcgtcttgtgcccgataccgccgcgatgtcacccggcgcgatggccgcacttgcctat
ccagaccggatcgggatgcgccgccccggcgatcagccgcgctatctgctgtcgggcggg
cgtggcgcggtcctgacagagggcgatgcgatgggcgccgagcctttcctcgtcgcgacg
gatctggatggtcagggtcgtgaatcgcgcattcgccttgccctgcccatcaccgaagac
gagatccgcgacgcttttgccgaccggatcgaaacacttgaggcggtcgaatggtcgccg
cgcgacggccgcattcttgcacgagagcgtgaccggctgggcgcattggtattggcagaa
cgtccactgccgaaaccggcagaagacgccatcgcccgtgccgcgtgggagggactgcaa
tccgaagggctgacttggtccccgaaggccgcccgtctgcgcgcccggatcagattgttg
cccgaggggcccgatgtctcggacgaggaactgctgacggatggagactggcttctgccg
tttctgggcaaggtcaggaaccggggcgatctgcgcgggctggatctgacgcagccgctg
atgaacctgctgggctgggatgggcagcaggcgctgaaccggctgacacctgcgcacttc
acgacaccgctcgggcgacaggtgccgattgactatgatgcggaaacaccctctgtcgag
ctgcgtctgcaagaggtattcggcctcacccgccacccgatgatcggcaaccagccgctg
cggatgacgctgctttcgccgggacagaagccggttgcggtgacgaccgatctgccgggt
ttctgggccggttcctatgcagatgtgcgcaaggacatgcgcggacgctatcccaagcac
ccgtggcccgaagacccgacacaggccgatccgacgcttcgcgccaaaccgcgcggcagt
taa
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