Pantoea allii: ACRPH8_21280
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Entry
ACRPH8_21280 CDS
T11704
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
palt Pantoea allii
Pathway
palt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACRPH8_21280 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palt03021
]
ACRPH8_21280 (rho)
03019 Messenger RNA biogenesis [BR:
palt03019
]
ACRPH8_21280 (rho)
Transcription machinery [BR:
palt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACRPH8_21280 (rho)
Messenger RNA biogenesis [BR:
palt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACRPH8_21280 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
XUW20660
LinkDB
All DBs
Position
complement(4558082..4559341)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN
YDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTSQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattaccctcggcgagaat
atggggctggaaaatcaggctcgtatgcgcaagcaggacattattttctcaatcctgaag
cagcacgcgaaaagcggcgaggacatcttcggtgatggtgtgctggagatattgcaggat
ggatttggattcctccgctctggagacagctcctacctcgccggtcctgatgatatctac
gtttctcccagccaaattcgccgctttaacctccgcactggtgacaccatcgccggcaaa
atccgtccacctaaagaaggtgaacgctactttgccctgctgaaagttaacgaagttaac
tacgacaaaccagagaactcgcgtaacaagattctgttcgaaaacctcacgccgctgcac
gctaacagtcgtctgcgtatggagcggggtaatggctctactgaagacttaaccgctcgc
gtactggatctggcgtcaccgattggtcgtggccagcgtggtttgattgtggcaccgcca
aaagccggtaaaacgatgctgctgcagaacatcgcgcaaagcattgcctacaaccatccc
gactgcgtgctgatggtgctgctgatcgatgaacgtccggaagaagtcaccgagatgcaa
cgcctggttaaaggtgaagttattgcttctaccttcgacgaaccggcttcgcgtcacgtt
caggtggccgagatggtgatcgaaaaggccaagcgcctggttgaacataaaaaagacgtc
atcattttactcgactccatcacgcgtctggcccgtgcctacaacaccgttgtcccggct
tccggtaaagtcttaaccggtggtgtggacgccaacgccctgcatcgtcctaagcgtttc
ttcggtgcggcacgtaatgtggaagagggcggaagcctgaccatcattgcgacggccctg
gtggatacgggttcgaagatggatgaagtgatttacgaagagtttaaaggtaccggtaac
atggaactgcatctcgcgcgtaaaattgctgaaaaacgtgtcttcccggcgattgattac
aaccgctccggtacacgtaaagaagagctgctaacctctcaggaagaactgcagaaaatg
tggatcctgcgtaagatcattcatccaatgggtgaaatcgacgcgatggagttcctgatt
aacaagttggccatgaccaaaaccaacgatgaattcttcgacatgatgaagcgttcttga
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