Pseudoglutamicibacter albus: CJ193_007060
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Entry
CJ193_007060 CDS
T09091
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palu
Pseudoglutamicibacter albus
Pathway
palu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ193_007060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palu03019
]
CJ193_007060
03009 Ribosome biogenesis [BR:
palu03009
]
CJ193_007060
Enzymes [BR:
palu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ193_007060
Messenger RNA biogenesis [BR:
palu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ193_007060
Ribosome biogenesis [BR:
palu03009
]
Prokaryotic type
rRNA helicases
CJ193_007060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WIK83839
LinkDB
All DBs
Position
1564712..1566823
Genome browser
AA seq
703 aa
AA seq
DB search
MAEKHETTNAPEKSAEETSAEETAVAAEETSAEETSTETKPEGPTFAELNIEPRVLAAVE
DLGYERPSPIQAATIPTLLEGRDVVGLAQTGTGKTAAFAIPALTKIAEINDVNGPAETPQ
ILVLAPTRELALQVAEAFSSYARYFDDLTILPVYGGSPYGPQLKALRRGAQVVVGTPGRV
IDHIERGSLDLSNLLYVVLDEADEMLRMGFAEAVDTILESTPEDKQVALFSATMPKQIRR
IAETYLRDPEHIAVDTASTPGANIRQRYIQVMHQYKLDVMTRLLETEDTDGVIAFVRTRQ
ATEDVATKLKARGFRAAAINGDVPQVQREKTVDQLRDGVIDILVATDVAARGLDVERISH
VFNYDIPHDTESYVHRIGRTGRAGRTGDAILFMTPRERYLLKHIERATGGTVEEAPIPGI
EAVNSSRLGRLAERLTPALEQEDLTPYRELVTDYVAEDDVDAVQVAAAFAFLAQGGQPLL
TEEIPTTPPAKKKRAKRERANDDAVAGERGSARSGGRGGHGDSDKVTYKIAVGRRNRATP
GAIVGALANEGGLVSGDIGHIDIRENFTLVDLPVDMPDSTLDLLADTRVAGRRIDIQLDQ
GGPSRGGSSHGGGHRDFGERRGGHRGERRDFGDRRGGFRGERGERGGKFGDRDDRHSSGS
RGKKSWDRDDRKGSFKHKKKDSAARKFKDSKDKGAPKWKRRGR
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaacacgaaaccactaacgctccggaaaagagcgctgaggaaactagcgcc
gaagagaccgcggttgcggctgaagaaactagcgctgaagaaaccagcaccgaaaccaag
ccggagggtccgacgttcgctgagctgaacatcgaaccccgcgttttggctgcggtagaa
gacctcggctacgaacgcccgtcaccgatccaggcagcaaccatcccgaccctgcttgag
ggtcgcgacgtcgtgggcctcgcgcagaccggtacgggtaagaccgcggcgttcgcgatc
ccggcactcaccaagatcgcggaaatcaacgacgtcaacggcccggctgaaaccccgcag
atcctcgtgctcgcgccaacgcgtgagctcgccctgcaggtagcggaagcgttctcttcc
tacgcgcgctacttcgacgacctcacgatcctgcccgtgtacggcggctccccgtacggc
ccgcagctcaaggcgctgcgccgtggcgcacaggttgtggtgggcaccccaggccgcgtt
atcgaccacatcgaacgcggatccctcgacctctccaacctcctctacgtggtcctcgac
gaagccgacgaaatgcttcgcatgggtttcgcggaagccgtggacacgatcctcgaatcc
acgccggaagacaagcaagtcgcgcttttctcggcgacgatgcctaagcagatccgccgc
atcgctgaaacctacctccgcgaccccgagcacatcgcggtggacaccgcatcgacccct
ggcgcgaacatccgccagcgctacatccaggtcatgcaccagtacaagctcgacgtcatg
acgcgcctgctggaaaccgaagacaccgacggcgtgatcgctttcgtgcgcacccgccag
gcgaccgaagacgtcgcaaccaagctcaaggcccgcggcttccgtgccgcggcgatcaac
ggcgacgtcccgcaggttcagcgtgagaagacggtcgaccagctgcgcgacggcgtgatc
gacatcctggttgcgaccgacgttgcggcgcgcggcctcgacgttgaacgcatctcccac
gtgttcaactacgacattccgcacgacaccgagtcctacgtgcaccgcatcggccgcact
ggccgcgccggccgtactggcgacgcgatcctgttcatgaccccgcgcgaacgctacctg
ctcaagcacatcgaacgcgcaaccggcggcacggtcgaagaagcgccaatcccgggcatc
gaggccgtgaactcgtcccgcctgggccggctcgctgagcggctcacgcctgcgctcgag
caagaggacctcacgccgtaccgcgagctcgtgaccgactacgtcgccgaggatgacgtc
gacgccgtgcaggttgctgcggcgttcgcgttcctcgcgcagggcgggcagccgctactg
accgaggaaatcccgacgactccgccggctaagaagaagcgcgctaagcgtgaacgtgca
aacgacgatgcggtggcgggcgagcgcggttccgcacgctctggtgggcgtggtggccac
ggtgacagcgacaaggtgacctataagatcgcggtgggccgccgcaaccgggcgaccccg
ggcgcgatcgtgggtgcgctcgcgaacgaaggcgggctcgtgtccggagacatcgggcac
atcgacatccgcgaaaacttcaccctcgtggaccttccggtcgacatgccggactcaacc
ctggacctgctggccgacacccgtgtagccggccgccgcatcgacatccagctggatcaa
ggcgggccgtcgcgcggtggttcttcgcatggcggtgggcaccgtgactttggcgaacgc
cgtggtggacaccgcggtgagcgccgtgactttggtgaccgccgaggtggattccgtggt
gagcgcggcgaacgtggcggcaagtttggtgatcgtgatgatcgtcactcgtcgggttcg
cgcggcaaaaagtcgtgggatcgcgacgaccgcaagggcagcttcaagcacaagaagaag
gactctgcggcgcgtaaattcaaggattccaaggacaagggcgctcctaagtggaagcgt
cgcggccggtag
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