Pseudoglutamicibacter albus: CJ193_007245
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Entry
CJ193_007245 CDS
T09091
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palu
Pseudoglutamicibacter albus
Pathway
palu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ193_007245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palu03021
]
CJ193_007245
03400 DNA repair and recombination proteins [BR:
palu03400
]
CJ193_007245
Enzymes [BR:
palu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ193_007245
Transcription machinery [BR:
palu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ193_007245
DNA repair and recombination proteins [BR:
palu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ193_007245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BRE1
Sds3
DUF4407
PLC-beta_C
Motif
Other DBs
NCBI-ProteinID:
WIK83869
LinkDB
All DBs
Position
1603646..1607533
Genome browser
AA seq
1295 aa
AA seq
DB search
MSTESTFGLMRIGLATAEQIREWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
SCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDRRHEELPNLQAAHDLEIKNIANQRDADIAEIAQELEEN
LARLEAEGAKAAEKKKARDAADKEMANVRKNADAEIERLTEVWERFKTIKVGDLEGNESL
FRTMRAKYGLFFEGSMGAEAIQKRLQNFNLEDEAEDLREIIATGKGQRKTRAIKRLKVVN
AFLTTDNSPEGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPQTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNVKAAKRMVERFR
PAVWDVLEEIIAEHPVLLNRAPTLHRLGIQAFEPQLIEGKALQLHPLACAAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVALPAQDMIIGLNHLTTHREGVAGEGR
SFSSVAEAIMAFDAGELDLNAVCTIAVDNFVPSSSQPAPEGWVEGQPALLETTLGVALFN
DSLPEDYPWFAEVATKGTLGDLVNDLAERYPKVETARTLDNLKDMGFQWATRSGVTVAIS
DVTSHMDKAAILAPYEERAQKVQTQFEMGLIADDERRTELIDIWTQATDEVASKMQEGME
KYNTINRMVTSGARGNWLQLRQIAGIRGLVSNPQGEIIPRPIKSSYREGLTVLEYFIATH
GARKGLADTALKTANSGYLTRRLVDVSQDVIVREHDCGTRRGLKVAIAHEVNGVRTLHET
VENSAYTRTLAKDVVDANGELLAEAGDDVGDVLIQRLFDAGIDEVNVRSVLTCDSAVGTC
ALCYGRSLASGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAESGDITQGLPRIQE
LFEARTPKGLAPITEVAGRVSIEDTERALRVIVTPDDGSEEEAYPVLRRSRLLVEEGDHV
EVGQQLAAGAIDPKQVLRVLGPREAQKFLVREVQAVYQSQGVGIHDKHVEVIVRQMLRRI
TVIDQGDTDLLPGELTDRAVFQAANRKAVAEGARPASGRDELMGITKASLATESWLSAAS
FQETTRVLTQAAMEAKSDPLLGLKENVIIGKLIPAGTGLDRYTQVDVEPTEEAKASFYSG
PSAFSGFDYQGMDAFGGEFSAMSMEDYGNFGHDFN
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaatcgactttcggattgatgcgtattggcttggctactgctgagcagatc
cgcgaatggagctacggcgaggtcaagaagccggagaccattaactaccgcacgctgaag
ccagagaaggatggcttgttcggcgagcagattttcggtcctacgcgtgactgggagtgc
tcgtgcggtaagtacaagcgcgtccgcttcaagggcattatttgtgagcgttgtggcgtt
gaggtgacccgttctaaggtgcgccgtgaacgtatgggccacatcgagcttgctgctcca
gtgacgcacatctggtacttcaagggcgttccttcgcgtttgggttaccttttggatctg
gcgccgaaggaccttgagaaggtcatctacttcgcggcgtacatgatcacctctgttgat
gaggatcgccgtcacgaagagctgcctaacttgcaggctgctcacgatctcgagatcaag
aacatcgctaaccagcgtgacgctgatatcgctgagatcgctcaggagcttgaagagaac
ctcgctcgtcttgaggctgagggtgcgaaggctgctgagaagaagaaggctcgcgacgcc
gctgataaggaaatggcgaacgtccgcaagaacgcggatgccgagatcgagcgtctcacc
gaggtgtgggagcgcttcaagaccatcaaggtcggcgaccttgaaggtaacgagtcgttg
ttccgcacgatgcgcgctaagtacggcttgttcttcgaaggttcgatgggtgctgaggcg
atccagaagcgcctgcagaacttcaacctcgaggacgaggccgaggatctgcgtgagatc
atcgctaccggtaagggccagcgtaagactcgcgcgatcaagcgcctcaaggttgtcaac
gctttcttgacgaccgataactcgcctgaaggcatggtcctggatgctgttccggtgatc
ccgcctgagctgcgtcctatggttcagctcgatggtggccgcttcgctacctcggacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcgtctgatggatctg
ggtgccccagagatcatcgtgaacaacgagaagcgcatgttgcaggagtctgttgactcg
ctgttcgataacggccgccgtggtcgtccgcagactggcccgggtaaccgcccgctgaag
tcgctgtctgacatgctcaagggtaagcagggtcgcttccgtcagaacctgctcggtaag
cgtgttgactactctggccgttcggtcattgttgttggtccgcagctcaagttgcaccag
tgtggtctgcctaagcagatggcgcttgagctgttcaagccgttcgtgatgaagcgtctg
gttgacctcaaccacgctcagaacgtcaaggctgctaagcgtatggttgagcgtttccgc
cctgcggtctgggacgttcttgaagaaatcatcgctgagcacccggttctgctgaaccgt
gcaccaaccctgcaccgcctgggtattcaggcgtttgagccgcagctcattgagggtaag
gctctccagcttcacccactcgcatgtgctgcgttcaacgctgactttgacggtgaccag
atggctgtgcacttgccgctgagccctgaggctcaggctgaggcgcgcatcttgatgttg
tcctcgaacaacattctgaagccttcggatggccgtcctgttgcgttgcctgcgcaggac
atgatcatcggtttgaaccacttgacgactcaccgtgagggcgttgctggtgagggccgt
agcttctcgtctgtcgctgaagcgatcatggcgttcgatgcgggcgagcttgatctgaac
gcggtctgcacgattgcagtggacaactttgttccgtcgtcttcgcagcctgcccctgag
ggttgggttgagggccagccggctcttcttgagacgacgctgggtgttgctctgttcaac
gactcgctcccagaggattacccgtggttcgctgaggttgctacgaagggcaccttgggt
gacctcgtgaatgacctcgctgagcgttacccgaaggttgagacagctcgtacgctcgat
aacctcaaggacatgggcttccagtgggctacccgttcgggcgttaccgttgcgatttcc
gacgtgacctcgcacatggataaggccgcgatcttggctccgtatgaggagcgtgctcag
aaggttcagactcagtttgagatgggtctgatcgctgatgatgagcgccgtaccgaactg
attgatatctggactcaggcaaccgacgaggttgcgtccaagatgcaggaaggtatggag
aagtacaacaccattaaccgcatggtgacctcgggtgctcgtggtaactggctgcagttg
cgtcagattgccggtattcgtggtctggtgtcgaacccgcagggtgagatcattcctcgt
ccgattaagtcttcctaccgtgaaggcttgacggttcttgagtacttcatcgctacgcac
ggtgctcgtaagggtcttgcggataccgcgttgaagaccgctaactcgggttacttgacg
cgtcgtctcgttgacgtttctcaggacgtcatcgtccgtgagcacgactgtggcacgcgt
cgtggcctcaaggtcgctatcgcgcacgaggtcaacggtgtccgtactctgcatgagact
gttgagaactcggcgtacacccgcaccttggctaaggatgttgtggacgctaacggtgag
ctgttggctgaggctggcgacgatgtgggcgatgtcttgattcagcgcctgttcgatgcc
ggcattgacgaggtcaacgtccgttcggttctgacgtgtgattccgctgttggtacgtgt
gcactttgctacggccgctcgctggcttccggcaagctggttgatatcggcgaggctgtg
ggtattgttgcggctcagtcgattggtgagcctggtacccagctgacgatgcgtaccttc
cactcgggtggtgttgctgagtctggcgatattacccagggtctgccacgtattcaggag
ctcttcgaggcacgtactcctaagggtctggcgccgatcactgaagttgccggtcgtgtt
tcgatcgaggacacggagcgtgctctgcgtgttatcgtgaccccggatgatggctctgag
gaagaggcttacccggttctgcgtcgttctcgcctgttggttgaggaaggcgatcacgtt
gaggttggtcagcagctggctgcgggtgctatcgatccgaagcaggttctgcgtgttctt
ggcccgcgtgaggctcagaagttcctggtccgtgaggttcaggctgtgtaccagtcccag
ggtgtgggcattcacgataagcacgttgaggttatcgttcgccagatgctgcgccgcatc
accgtgattgatcagggtgacacggatctgctcccaggtgagttgactgatcgtgcggta
ttccaggcggctaaccgtaaggctgtcgctgagggtgctcgcccggcgtctggccgtgac
gaactcatgggtatcacgaaggcctcgctggctaccgagtcgtggctgtctgccgcgtcc
ttccaggagaccacgcgtgttctgacacaggcagctatggaagcgaagtctgatccgctg
ttgggcctcaaggagaacgtcatcatcggtaagctgatccctgccggcacgggcttggat
cgctacacgcaggttgatgttgagccaactgaggaagctaaggcttcgttctactccggc
ccgtccgcgttctctggttttgattaccagggcatggatgcgttcggtggcgagttctcc
gcgatgtcgatggaggactacggcaacttcggtcacgatttcaactga
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