Pseudomonas alvandae SWRI17: KSS97_09000
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Entry
KSS97_09000 CDS
T07736
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
palv
Pseudomonas alvandae SWRI17
Pathway
palv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS97_09000 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palv03019
]
KSS97_09000 (rne)
03009 Ribosome biogenesis [BR:
palv03009
]
KSS97_09000 (rne)
Enzymes [BR:
palv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KSS97_09000 (rne)
Messenger RNA biogenesis [BR:
palv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSS97_09000 (rne)
Ribosome biogenesis [BR:
palv03009
]
Prokaryotic type
rRNA processing factors
KSS97_09000 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXI55052
LinkDB
All DBs
Position
complement(2022097..2025294)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHTNQSSYEIAAAAAEVEDVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVATPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNGR
QQTRNRNGRRDEERKPREERAPREERAPREPREERQPREVREEVPAVAREERAPRPPREE
RQPRAPREDRKPRGEREERVRELREPLDAAPAAAAATAEERPARQPREERAPRPPREERQ
PRAEQAAAAASEEEVLNAEEPLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVI
EGSEESESTENAEAPSAADLAAGLAVTAAVASSAISAPAEAQANEQAERATAAVENAPVE
APVVESTAPVEVTASPEVELAPVREAQPEAEVAAEPAPVVEAPIVAAEPVVEAPAEEKAP
EPAREEQTAFNWTAEPAAPAPVVEPEPTPEPVQAVEPEVVEPAPVIEAPVAVEAPAPAQE
PAPASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAAEPAPVVEEVTEAA
PAPVAETPAEPASALDEPQHTAEEVEVAPRHTEALEKEHEPKPHA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagac
ggccagcgcctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaag
gccccagaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcattgtc
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctc
gccggccgctacctggtcctgatgccgaacaacccgcgtgccggcggcatttcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctcaatggcctggtcgcacctgcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtc
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gagctgccgtccggcggttccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtc
cgtgaatgcctggaagccgaccgcgcccgcgtacaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcaacgcctgcgtccatccctgggcgaaagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgtcgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcccaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgtaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcatcctgccgaacgatcacctcgagacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaa
atcgctgctgccgctgccgaagtggaagacgtccagccagctgccgccactcgcaccctg
gttcgccaggaagcagcggtcaagaccgctccggcccgcgccaacgcaccggttccgacc
gaagtggccgctccggttgccactccggccgcagcaccagagccaagcctgttcaaaggc
ctggtgaagtccctggtcagcctgttcgccaccaaggaagaacctgccgccccggccgtc
gtcgccaagccggccgccaccgagcgccctgcccgcaacgaagaacgccgcaacggtcgc
cagcagacccgcaaccgcaacggtcgtcgcgacgaagagcgcaagccccgcgaagaacgt
gcaccgcgtgaagagcgcgcgccacgcgagccgcgtgaagaacgccagcctcgcgaagtc
cgtgaggaagtgccagccgtagcccgcgaagaacgcgcaccgcgtccaccgcgtgaagag
cgtcagcctcgcgcaccgcgtgaagatcgcaagccgcgtggcgagcgtgaggaacgtgtt
cgcgaactgcgcgagccactggatgccgccccggccgctgctgccgccaccgctgaagag
cgtccggcccgccagcctcgtgaagaacgcgcaccgcgtccgccacgtgaggaacgccag
ccacgcgccgagcaagccgccgccgctgccagcgaagaagaagtgctgaacgccgaagag
ccgttgcaggaagacggccaggacaccgccgaaggcgatcgtccacgtcgccgctcccgc
ggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcgatgccaacggcaacgtgatc
gaaggttcggaagaatccgagtccaccgagaacgccgaagcgccaagcgccgctgacctg
gccgccggcctggccgtcactgcggccgttgccagcagtgcgatcagcgccccagccgaa
gcccaggcaaacgagcaggctgagcgcgccaccgctgcggtggagaacgcgccggttgaa
gcgcctgtcgtcgaatccactgccccggtagaagtcaccgcttcgccagaagtggaactc
gcgccggtacgtgaagcccagcctgaagctgaagtcgccgccgagcctgcgcccgttgtt
gaagcgcccatcgtcgctgccgaaccggttgtcgaagcaccggcagaggaaaaggcgcca
gagcctgcccgcgaggagcagactgcgttcaactggaccgcagagcccgccgcaccggca
cctgttgtcgagcctgagccaacgccagagcccgtgcaagcggtcgagccagaagtggtc
gaacctgctccagtgatcgaagcaccggtggctgtcgaagcgcctgcccccgcgcaagag
cctgcccctgccagtgccctgaccgcgaatggccgcgcaccgaacgatccacgtgaagtg
cgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagctgaacaagccgccgctgcc
gccgctcaagcgcctgctgccgaaccggctccggtcgtggaagaagtcaccgaggcagcc
cctgccccggtcgctgaaaccccagccgaaccagcctcggcgctcgacgaaccccagcac
accgctgaagaagtcgaagtcgcgccacgtcacactgaagccttggaaaaagagcacgag
cctaaacctcacgcctga
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