Pseudomonas alvandae SWRI17: KSS97_10100
Help
Entry
KSS97_10100 CDS
T07736
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palv
Pseudomonas alvandae SWRI17
Pathway
palv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS97_10100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palv03400
]
KSS97_10100 (mfd)
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS97_10100 (mfd)
DNA repair and recombination proteins [BR:
palv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS97_10100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
QXI55257
LinkDB
All DBs
Position
complement(2255440..2258889)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKPLPDL
AIEAKATQPLAALAGFLDGFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIENQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNNSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggctatcgccgaggccgccagcgctgcaaagcgcttc
accctgttattgaccgccgacagccagagtgccgagcggctcgagcaggaactgggtttc
ttcgccccggatttgccggtgttgcatttcccggactgggaaaccctgccctacgacctt
ttttcgccgcaccaggacatcatttcccagcgcatcgccagcctttatcggctgccggag
ctcagtcatggcgttttggtagtgccaatcaccacagccctacatcgcttggcgccgacc
caattcctgctgggcagcagcctggttctggacattggccagaagctcgacgtcgagcaa
atgcgtactcggcttgaggccagtggctaccgctacgtcgacaccgtttacgagcacggc
gagttcacggtgcgcggggcgttgatcgacctgttcccgatgggcagcaaattgccgtat
cgcatcgatctgttcgatgacgaaatcgagaccttgcgcaccttcgacccggagaaccag
cgctccatcgacaaggtccagtcgatccgcctgctgccggccaaggaattcccactgcaa
aaagacgcagtgactcgcttcaaggcgcgctttcgcgaacgtttcgatgtggatttccgc
cgttgtccgatcttccaggacctgagcagcggaatcaccccagccggtatcgagtactac
ttgccgttgttcttcgaagaaacctccacgttgttcgattatttgccccaggacacccag
gtattttccctgccgggcatcgagcaggctgcggaaaacttctggaacgacgtgcgcaat
cgctacgaagaacgtcgcgtcgatccgtcccgtcctttattgccgcccgccgagctgttc
ctgccggtggaggactgcttcgcccggctcaagagctggccgcgcgtggtggcgagccag
caggacgtggaaaccggcgtcggtcgtgaacgcttccccgccaagcccttgccggacctg
gcgatcgaagccaaggccacgcaaccgctggcggccctggccggtttcctcgacggattc
cctggtcgcgtgctgtttaccgccgagtccgcaggccgccgcgaagtactgctggaactg
cttgaacgcctgaagctgcgcccgaagaccgtcgacagctggcctgactttgtcgcgggc
aaggatcgcctggcgatcaccatcgcgccgcttaacgacggcctggtccttgacgatccc
gccctggccctggtggccgaaagcccgttgttcggccagcgcgtgatgcagcgtcgccgc
cgcgagaaacgcgccgacgccgccaacgacgcggtcatcaagaacctcaccgaactgcgc
gaaggtgcgccggtggtgcacatcgatcatggcgtaggccgttacctgggcctggcgacc
cttgagatcgaaaaccaggccgccgaattcctcaccctggaatacgccgagggcgccaag
ctctacgtgcctgtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ttggccccgctgcatcgcctgggctcggaaacctggcagaaggccaagcgcaaggccgcc
gaacaggtgcgcgacgtggcggcggaattgctggacatctatgcccgccgtgccgcgcgc
gagggctatgcattcgccgacccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgcttgcg
cccaagcccatggaccgcctggtgtgcggcgacgtaggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcattgccgtgcacggcggcaagcaagtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggcccgtg
accgtggaagtgatgagccgcttcaagtccgccaaggaagtgaacgccgccgtcgcggac
ctggccgagggcaagatcgacatcgtcattggcacgcacaagctgctgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgatgaggaacaccgctttggcgtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
atcccgcgcaccttgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccaca
ccgccagcccgccgcctgtcggtgcgcaccttcgtcatggagcagaacaacagcacggtc
aaggaagccctgctgcgtgagctgctgcgcggcggccaggtttattacctgcacaacgat
gtgaagactatcgagaaatgcgccgccgacctggccgagctggtaccggaggcccgcatc
ggcatcggtcacgggcagatgcgcgagcgcgagctcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ttgcgcggccgggtcggacgcagtcaccaccaggcctacgcctacctgctgacaccgccg
cgccagcagatcaccccggacgcggaaaagcgcctggaagccattgccaatacccaggac
ctgggcgccggtttcgtgctggccaccaacgacctggaaatccgtggcgccggcgaattg
cttggcgacggccagagtggccagatccaggcagtgggcttcaccctgtacatggaaatg
ctcgaacgggcggtcaagtcgatccgcaagggcgaacaaccaaacctcgaccaaccactg
ggcggcgggccggagatcaacctgcgggtgccggcgctgatcccggaagattatctgccg
gatgtccacgcacgcctgatcctctacaagcgcatcgcctcggccactgacgaggaaggc
ttgaaggatctgcaggtggaaatgatcgaccgcttcggcctgctgccggagccgaccaag
aatctggtgcgcaccacgctgctcaagctcaaggccgagcaactgggcatcaagaaagtc
gacggcgggcccaacggcggccgtatcgagttcgaagcccagaccccggtcgatccactg
gtgctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgccacgatg
ttcaagttcatggtgcccatggaacgcccggaagagcgtttcaataccgtagaggcgctg
ttcgagcgcctcactccgaccactgcttga
DBGET
integrated database retrieval system
