Pseudomonas alvandae SWRI17: KSS97_21535
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Entry
KSS97_21535 CDS
T07736
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
palv
Pseudomonas alvandae SWRI17
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palv03019
]
KSS97_21535 (hrpA)
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSS97_21535 (hrpA)
Messenger RNA biogenesis [BR:
palv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSS97_21535 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
APHB_HrpA
nSTAND3
AAA_22
AAA_25
NACHT
T2SSE
ABC_tran
nSTAND_NTPase5
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QXI52093
UniProt:
A0ABX8QCV8
LinkDB
All DBs
Position
complement(4883306..4887217)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPTIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARK
ASVPSIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQQGLI
GHTQPRRIAARSVASRVADELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLSRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKDPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSANTRLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTANQYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLDWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEATQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQEPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL
AETAKFLRGKLPGLTELGLLYRELGRVDGLVEDILLVSLDSCILEGEPSLPRDGAALAAL
AERKRGGWTEHAERLAKLTLDILKIWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaagcccctacaatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccggcaccggttgcggcggcagttgctcgagctgcgcaagaaacccgacgaagcc
aagctggcccagtgggtgacgcgcatgcaggcgtcgtgcgaccaggtgctggcgcgcaag
gcgagcgtgccgtcgatacgctacgacgacaacttgccgatcgccgccaaacgcgacgaa
atcaaggaggcgttgctcaagcatcaggtgttgatcattgccggcgaaaccggctcgggc
aaaaccacgcagttgccgaagatctgcctggaaatcggccgcggccagcagggcttgatc
ggccacacccagccgcgccgcatcgcggcccgcagcgtggcgagccgggtcgccgatgag
ctggccacgccgttgggcgcgctggtgggttatcaggtgcggttcgaggaccagagcgac
gccaacaccctgatcaagctgatgaccgacggtatcctgctggccgaaacccagaacgac
cgttacctcgaacgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaac
atcgacttcctgctcggctacctcaagaccctgctgccgcgtcgtccggacctgaaagtc
atcatcacctcggcgaccatcgacctggagcgcttctccaagcattttgatgacgcgcca
atcgttgaagtctcgggccgcaccttcccggtggaaacctggtatcgcccgctgacgctg
gagcaggacgaggagggcaaccgggtcgaggacgacttgaccgtcgaccaggcgatcctc
gccaccctcgacgaaatcgccgcctacgagcgcagcgaacggcgcagccccggcgatgtg
ctggtgtttttgccgggcgagcgggagattcgcgacgccgcggagatgctgcgcaaggcc
cagctcaagcacaccgaaatcctgccgctgtatgcgcgcctgtcgcccgccgaacaacaa
cgcatcttccagtcccacccgggccgtcgcgtggtgctggcgaccaacgtcgccgagacc
tcgctgaccgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctatcgcgccaaggtccagcgcttgcccatcgaagccatttcccaggccagcgcc
aaccagcgcaagggccgctgcggacgggtcgagccggggatttgcgtgcgcctgtacagc
gaggaagatttcctcagccgtcccgagttcaccgatccggaaatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctgcacctgcgcctcggcgaaatcaccgatttcccgttc
atcgagccgccggacggcaaggctatcagcgacggtttcaacctgctgcaagaactctcg
gcggtggatcgcaacagccagttgacgccgttgggtcggcaattggcgcgcctgccggtg
gacccacgcatgggccgcatgttgttggaagcggcgaaattgggcagcctccaggaagtg
ctgatcgttgccagcgccatgtcgatccaggacccgcgcgagcgtccgcccgagcgccaa
caggccgccgaccaggcccacgcccaatggaaggacgcggattcggactttgccgggctg
gtcaatctgtggcgcggttttgaagagcagcgccaggccttgaccgccagcccgctgcgc
aactggtgccgcaagaacttcctgaattatctgcgcctgcgcgaatggcgcgattcccat
cgccagttgagcctgatctgccgcgacatgcagctgagcctcaacaaggacccggccgac
tacccgaaactgcacaaggccgtactgtcgggcctgttgagccagatcggccagaagacc
gaagacggcgactacctcggcgctcgccagcgccggttttgggtccatccatcgtcaggc
ctgggcaagaaacgcccgcagtggttgatgaccgcggagctggtggaaaccaccaagttg
tacgcacgcatggtggcgaagatcgagccggactggatcgaaccgctggccgggcacctg
atcaagaaaaaccacttcgagccccattgggagaagaagcgcgggcaagtggtggcctat
gagcaaatcaccttgttcggcctcatcgtcgtcggtcgcaggccggtgcactacgggccg
gtggatccggtggtgtcccgtgagttgttcatccgcgaggcgctggtacgcggcgagatc
cagtcgaaggccaagtgcctgagcgccaacacgcgcttgctggaacaactcgacgagctc
gaagccaaggcccgtcgccgtgacatcctcgcggacgaggaaaccctgtttgccttctac
gatgcgcgcctgcccgccgagatccaccagaccgcgacgttcgatagctggtaccggatc
aacagccagaaagacccgcagctgctgatcatgcgtgaggaagacgtgctggcccgcgag
gcgagcgaggtgacggccaaccagtaccccgacaccttgcgtgtcggcgacctgaccttg
ccgttgagctatcacttcgaacccaaccatccccgcgacggtgtgaccttgcgggtgccg
gcgccgctgctgccgatgctcccgccggagcgtctggactggctggtgccggggatgatc
gaagccaagtgcatcgccctggtgcgcaacctgcccaaggccttgcgcaagaacttcgtg
ccggtgccggatttcgtcaaggcggcgctgcagcgcattacgtttgccgagggctcgttg
ccacagtcgttggggcgtgagctgctgcgcatgaccggcgcgcgggtcagtgatgaagcc
tgggccgaagcgacgcagcaggttgaaagccatctgcgcatgaaccttgaaatcgtcgat
ggccagggcaagtttctcggcgaagggcgagacctggccgaactgaccgcgcggtttgcc
gaagccagccaggccgcgttggccgtgccgcaaacggccaagagccaggaaccggtggaa
gcgaaagtcttcgcgccggtggccgagaaaacccagcagaagattgccggattgtcgatg
acggtctacccggcgttggtggaagagggcggggtggtcaaggaaggacgcttcccgacc
ccggccgaagccgagttccagcatcgtcgcgcgttgcagcgcttgctcatgcagcaattg
gccgaaacggcgaagtttctccgaggcaaactgcccgggttgacggagttgggcttgttg
taccgcgagcttgggcgcgtggacggtctggtggaagacatcctgctggtcagcctcgac
agctgcatcctcgaaggcgagccgagcctgccccgtgacggtgccgcactggcggccctg
gccgagcgcaagcgtggcggctggaccgagcacgccgaacgcctggcgaaactgaccctg
gacatcctcaaaatctggcacggcttgcagaaacgcttcaagggcaagatcgacctcgcc
caggccgtggcgctgaatgacatcaagcagcagcttagccacctggtgtatccgggtttc
gtgcgggaaaccccgcaccaatggctcaaggagctgccgcgctacctcaaggccatcgag
caacgcttcgagaagctgggcagccaggtgcagaaggaccgggtctggagcggcgagctg
tccaacctctgggcgcaataccaggcccgcgccagcaaacacgcccaggaaggcaagcgc
gacccgcaattggagctgtaccgttggtggcttgaggaataccgcgtgtcgctgtttgcc
cagcagttggggaccaaggtgccgatttccgacaagcgtctgggcaagcagtgggggttg
gtggaggcttga
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