Pseudomonas alvandae SWRI17: KSS97_25245
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Entry
KSS97_25245 CDS
T07736
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
palv
Pseudomonas alvandae SWRI17
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palv03019
]
KSS97_25245 (hrpB)
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSS97_25245 (hrpB)
Messenger RNA biogenesis [BR:
palv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSS97_25245 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
HA2_N
AAA_30
Flavi_DEAD
AAA_22
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QXI52796
LinkDB
All DBs
Position
complement(5654367..5656883)
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AA seq
838 aa
AA seq
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MISLPIDEVLPALRQALAKRHEAVLEAPPGAGKTTRVPLALLNESWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPHTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFREEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVAVRWGRPFQPGEFIEPRLVQTVLEALHDETGSVLVFLPGQAEIRRVHQQLADAL
GDGGNVLLCPLHGELDLAAQRAAIDPAPPGQRKVVLATNIAETSLTINGVRVVVDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEQLAAYGSAEILS
ADLAGLALQLGRWGVTPQQLVWLDVPPTAAYAQAQDLLQRLGALDGGQLTRHGQAMAELP
AHPRIAHLLLRGQALGLADMACNVAALLGERDILRGAGADLHSRLVLLSGEERAARGAQG
GVQRARQLARQYRGYLRGKAGEAVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLAN
GRAALFAEADSLMKQAWLVIAELGSRQGQREERIYLATDFDPALFDSVLAEQVQTVDQLD
WDEREGVLRAERQRKVGELVLSREPLAGLDEAARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRRLDLEAKGESEWPDVSDTALLGSLEDWLMPYLGRVSRLSHFANLDLSSIVHNL
LPWPLPQRLDEQAPHHLNVPSGSSIRLDYSEHPPILAVRLQELFGLADTPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARVKPRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgatttccttgccgattgatgaagttttacccgcgctgcgccaagccctggccaagcgc
cacgaagcggtgctcgaagcgccccctggcgctggtaaaaccacccgtgttcccttggcc
ctgttgaacgagtcctggctggccgggcagaccatcctcatgctcgaaccccgacgcctg
gcggcacgggcggcggccgagcggctggccagcgaactcggggaaaaggtcggtgaaacc
gtcggctaccggattcgcctcgacagcaaggtggggcctcatacgcgcattgaagtggtc
accgaaggcatcctcacccgtcgcctgcaggacgatccggcattggaaggcgttgggctg
ctgattttcgatgaatttcacgagcgcagccttgacgccgatctggcgctggccctgagc
ctcaatggccgggagctgtttcgcgaagagcagccgctgaagatcctgttgatgtccgcg
accctggaaggcgagcgtctggccggactgctggacgacgcgccgatcctgcgcagcgaa
gggcgcatgttcccggtggcggtgcgctggggccggccattccagcctggggaatttatc
gagccgcgactggtgcagaccgtgctcgaggcgctgcacgatgaaaccggcagcgtgctg
gtgttcctgcctgggcaagcggaaatccgtcgcgttcatcaacaattggccgatgccctc
ggcgacggcggcaacgtgttgctgtgcccgttgcatggcgaactggacctcgctgcccag
cgcgccgccatcgatccggcgccgcccggccaacgtaaagtcgtgctggccaccaacatc
gccgagacgagcctgaccatcaacggtgtgcgggtagtggtggacgccgggctcgcccgc
gtaccgcgattcgatccgggcagcggcatgacccgtctcgatacccaacgcatctcccgg
gctagcgcgacccaacgggccggtcgagccgggcgcctggaaccaggggtgtgctatcgg
ttgtggtccgaagaccagcacgaacagttggccgcctacggcagcgccgagattctttcg
gcggacctggccgggttggccctgcaattggggcgttggggcgtgacgccgcagcagttg
gtgtggctcgacgttccgccgaccgccgcgtatgcccaggcccaggatctgttgcaacgt
ctcggcgcactcgatggcggccaactgacccgacacggccaggccatggccgagctgccg
gctcatccacgtatcgcacacttgctgttgcgtggccaggcgctggggttggcggacatg
gcttgcaacgtggcggcgctgcttggcgagcgtgacatcctgcgcggcgccggcgcagat
ctgcacagccgtctggtcttgttgtccggcgaggagcgagcggcacgcggcgcccaaggt
ggcgtgcagcgggcccggcaattggcccggcaatatcgcggctatctacggggcaaggcc
ggggaagccgtcgccgatcccgatcatccacgctggctcggtgcattattggcgttggcc
tatccggatcgtgtcgcccagcaacggcgccccggcggtgcggagtatcgcctggccaat
ggtcgtgcggcgctgttcgccgaggcggatagcctgatgaaacaagcgtggctggtgatc
gccgaattgggcagtcgccagggccagcgggaggagcggatttacctggcgacggatttc
gacccggcgctgttcgattcagtgctggccgagcaggtgcagacggtcgatcaactggac
tgggacgagcgcgaaggcgtgctgcgggccgaacgccagcgcaaggtcggcgaactggtg
ctcagccgcgagccgctggccgggctggatgaagcagcccgcagccaggcgctggtcaac
ctggtgcggcgcaagggcctggagctgctgccgtggacgccggagttgcggcaatggcaa
gcgcgcgtggcgctgttgcgccggctcgacctggaggccaagggcgaaagcgaatggccg
gatgtcagcgacacggcattgctgggcagtctcgaggattggttgatgccgtatctggga
cgcgtctctcgactcagtcatttcgcgaacctggatttgtcgagcatcgtccacaacctg
ctgccctggcctttgccgcaacgcctggacgaacaggcgccccaccatttgaacgtgcct
tcgggatcgtcgattcgcctggattacagcgagcatccgccaatccttgccgtgcgcttg
caggagcttttcggcttggccgataccccgcgcatcgccggcggacggcaggtggtcaag
ctgcacctgctgtcgccggcgcgtcggccggtgcaagtgacccaggatttggcgaacttc
tggcgcagcacctatgccgaggtgaagaaggatctcaaggggcgctatcccaagcattac
tggccggatgatccgttggtggcggaagcgacggcgcgggtcaagccgcgcaagtga
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