Pseudomonas alvandae SWRI17: KSS97_26145
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Entry
KSS97_26145 CDS
T07736
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palv
Pseudomonas alvandae SWRI17
Pathway
palv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS97_26145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palv03021
]
KSS97_26145 (rpoC)
03400 DNA repair and recombination proteins [BR:
palv03400
]
KSS97_26145 (rpoC)
Enzymes [BR:
palv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS97_26145 (rpoC)
Transcription machinery [BR:
palv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS97_26145 (rpoC)
DNA repair and recombination proteins [BR:
palv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS97_26145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QXI52971
UniProt:
A0ABX8QCE1
LinkDB
All DBs
Position
complement(5841051..5845250)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGNSVTNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLANEDKFLAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacccgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagtcgcgctggcaaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaagggccagctgctg
aatgacgaacagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgcgatcgacctggagcacgagattggtcgt
ctgcgcgaagagattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgtctgctcgacctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgacgcactgctcgacaacggtcgtcgtggccgggctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcatcagtgcggcctgcccaagaaaatggcgctggagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggtcttgcgaccaccatcaaagccgccaagaaaatg
gtcgagcgcgaactgccagaggtctgggacgttctcgccgaagtgattcgcgaacaccca
gtgctgctcaaccgtgcaccgacccttcaccgtctgggcatccaggcgtttgaaccggta
ctgatcgaaggcaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcccaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagtcgaccgtgtgttccgtgctggc
gaagccgcactgcacgccaagatcaaggtgcggatcaatgaaaccgtaaacgatcgtgat
ggcaacagcgtgaccaacactcgcatcgtcgacaccactgtcggtcgtgcgctgttgttc
caggttgtgccaaaaggcttgtcgttcgatgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gccgaccagttgatgtacaccggttttgcctattcgaccatctccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagcccgcatcatcggtgctgccaccgaagaa
gtgaaagagatcgaaagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtaatcgacctctggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgccacggcaacgaagttgaccaggaatcgttcaac
tcgatgtacatgatggccgactcgggtgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagacgccgattact
gcgaacttccgtgaaggtttgagcgtactccagtacttcatctccactcacggtgctcgt
aagggtctcgcggataccgcgttgaaaaccgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaagacttggtcgtgaccgagatcgattgcggcaccgagcacggcctg
gtcatgacgccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgtcattgcccgtgacgtattcaagccaggtaccgaggacgtcatcgttcctgcc
ggcaccctggttgacgaaaagtgggtcgaattcatcgagctcaacagcatcgacgaagtg
atcgtgcgttcgccaatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgtccaggtgaagaatggcggtaccgtccgcctg
cacaacctgaagcacgttgagcgagtggacggccacctggtggctgtgtcccgttccggt
gagctggcaattgccgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gctgtgatttcggtgaaggaaggtgacaaggtcgacgctggtgccatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgagatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacatcgaa
gtactcgacgcaaaagatcgtccagctgcgggcaaggacatccgtccagccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggcggacggtgcgcggatcgcgatcggtgacgta
atcgctcgtatcccgcaggaaacctcgaagacccgtgacatcactggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaggcctcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgcctggtcattacgccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
tatcgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggtgactccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgcctggcgaacgaggacaagttccttgcc
aagttcactcgcgtactgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggctggt
accggtttggcctatcacagcgagcgcaagcgtcgccgtgatgcagacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagcggtaactga
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integrated database retrieval system
