Pseudomonas alvandae SWRI17: KSS97_27140
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Entry
KSS97_27140 CDS
T07736
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palv
Pseudomonas alvandae SWRI17
Pathway
palv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS97_27140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palv03019
]
KSS97_27140
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS97_27140
Messenger RNA biogenesis [BR:
palv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS97_27140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXI53153
UniProt:
A0ABX8QD51
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All DBs
Position
6069657..6071516
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AA seq
619 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASTIEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGRK
DKGKDKGKEKPASNGRGERPAREQKPREGSPAREQQRPAPRAASDRAPDEFLDDDIDNFG
NRVDYVPQQKPAAGRGRRPGAPAQGAGSGAPRNGQPQGRQNGPRNSNGSSTGTPPAKRNG
PRNGAPRDGQARREDSRPRRPARGDDQARQEPAVQNPRGNQPKIIHKESKTDRFPTPEQL
DQLPSRPRGEKPALLTRNR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctaccccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcacagacaggtacgggcaagaccggcggtttcgcccttccgatcctg
gaacggttgttcccgaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgacgcctacccgcgaactggcggcccaggtgcacgagagcttcaag
gtctacgctcgcgacctgaaattcgtcagtgcctgcatttttggcggtgtcggcatgaac
ccgcaggtccaggccatggcgcgcggcgtcgacgtgctggtggcctgccccggtcgcctg
ctggacctcgccggccagggcagcgtcgatctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggttttgtccatgatgtgaagaaagtcctggcccgc
cttccagccaagcgccagaacctgctgttttcggcgaccttctccaaggacatcaccgac
ctggccggtaagctgttgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcattgaacagcgcgtattccgccttcccgccagccacaagcgtgccctgctg
gcacacctgatcaccaccggcgcctgggaacaggtcctggttttcacccgcaccaagcat
ggcgccaatcgcctggccgaatacctcgacaaacacggcctgcccgccgtcgcgatccat
ggcaacaagagccagaacgctcgtaccaaggccctggccgacttcaaggccggcgaagtg
cgcatcctggtggccaccgacatcgccgcacgcggcctggacatcgatcagttgcctcac
gtcgtcaacttcgagttgcccaacgtcgatgaagactatgtgcaccgtatcggccgtact
ggccgggccggtcgttcgggcgaagcgatttccctggtcgcgccggacgaggaaaagctg
ctcaagagcattgagcgcatgaccaagcagaagattcccgacggcgacctgatgggcttc
gatgccagcacgatcgaggccgagaagcctgaagtgcgcgagcgtccggacgtccgcaac
ccgcgtaacccaagaggcccgcgtggcgatggcccgaatggcagcggtggcggtcgcaag
gacaaaggaaaagacaagggcaaggaaaagccggccagcaacggtcgcggcgaacgcccg
gcccgcgaacagaaaccccgcgagggctccccggcccgtgagcagcagcgcccggcacct
cgcgccgcatctgatcgcgccccagacgagttcctggacgacgatatcgacaatttcggc
aaccgcgtcgactacgtaccccagcagaaaccggccgcaggccgcggtcgccgcccaggc
gccccggcacaaggcgcaggttcaggcgcaccgcgcaatggccagccccaagggcgccag
aacggaccgcgcaacagcaatggttcgtccaccggcaccccaccggccaagcgcaacggc
ccgcgcaacggtgcgccacgtgacggccaggcccgtcgtgaagactcccgtccacgacgc
ccagcccgtggcgacgaccaggctcgccaggagcccgcggtgcagaacccgcgtggcaac
cagccgaaaatcatccacaaggaatcgaaaaccgatcgtttcccgacgcctgaacagctg
gatcaactgccaagccgtccgcgtggcgaaaaaccggccttgctgacacgcaatcgctga
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