Pseudooceanicola algae: PSAL_003980
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Entry
PSAL_003980 CDS
T06943
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
palw
Pseudooceanicola algae
Pathway
palw03410
Base excision repair
palw03430
Mismatch repair
palw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSAL_003980 (recJ)
03430 Mismatch repair
PSAL_003980 (recJ)
03440 Homologous recombination
PSAL_003980 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palw03400
]
PSAL_003980 (recJ)
DNA repair and recombination proteins [BR:
palw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PSAL_003980 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSAL_003980 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSAL_003980 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QPM89185
UniProt:
A0A418SFT1
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All DBs
Position
complement(416892..418637)
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AA seq
581 aa
AA seq
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MSFLDVDSSLTGRRWIGPTAGIERQAAALVQSDHLPEALCRILARRGVGPGETAAFLEPR
LQDLLPDPRSLLDMETVAARFLRAVRQRERIAIFADYDVDGGSSAALLIDWLRQMGRTAT
LYVPDRIDEGYGPNVPAMQALGAQHDLIICVDCGTLSHGPVAAAPCDVVILDHHLGSETL
PECIGVVNPNRQDETGALAHLCAAAVVFLMLVEANRQMRDEGAKGPDLMAMLDLVALATV
ADVAPLIGVNRALVRQGLRVMGRRERPGLTALADCARMNTAPAAYHLGFLLGPRVNAGGR
IGQADLGARLLASDEPVEARAMAERLDELNTERREIEAEVRAAAMVQAEERGLDAPLVWA
AGEGWHPGVVGIVASRLKEATNRPAIVIGMDGDEGKGSGRSVTGVDLGASIQKLAAEGLL
IKGGGHKMAAGLTVARDKLEAAMARLSELLEKQGAGSAGPGDLKIDGLLMPGAATPELVD
QLEAAGPYGASAPAPRFAFAGQKISFAKRIGDTHLKISFNDGMGKRVEAICFGAYDGPLG
PALEQHGGRPFHLAGKLEINDWGGRRNVQLRLEDAAPASDG
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctggacgtggactcctctctgaccgggcggcgctggatcggacctacggcc
gggatcgaacgccaggcagcggccctggtgcaaagcgatcacctgcccgaagccctgtgc
cgcatcctggcccggcgcggcgtgggaccgggcgagaccgcggcctttcttgaaccacgc
ctgcaggatctgctgcccgatccccggtccctgctggatatggagaccgtggcggcgcgg
ttcctgcgcgcagtccgacagcgcgaaaggatcgccatcttcgcggattacgacgtggat
ggcggcagttcggccgcgcttctgatcgactggctgcgccagatggggcgcaccgcgacg
ctgtatgtcccggaccggatcgatgaaggctatggccccaacgtgcccgccatgcaggcg
cttggcgcccagcacgacctgatcatctgcgtcgactgcggcacgctcagccacggaccg
gtcgccgccgcgccctgcgacgtggtgatcctggaccaccaccttggctccgagaccctg
cccgagtgcatcggcgtcgtgaaccccaaccgacaggacgaaaccggcgcgctggcccat
ctgtgtgccgccgccgtagtgttcctgatgctggtcgaggccaatcgccagatgcgcgac
gaaggcgccaagggcccggaccttatggccatgctcgacctggtggcactggcgaccgtg
gccgatgtcgccccgctgatcggcgtcaaccgcgcgctggtccggcaggggcttcgggtc
atggggcggcgcgaacgccccggcctgaccgccctggccgattgcgcacggatgaacacc
gcgcctgcagcctatcaccttggcttcctgctgggcccgcgcgtcaacgccggcgggcgc
atcgggcaggccgaccttggcgcgcggctgctggccagcgacgaacccgtcgaggcccgc
gccatggccgagcgcctggacgagctgaacaccgaacgccgcgagatcgaggccgaagtc
cgcgcagccgccatggtccaggccgaagagcgcggcctggacgcgccgcttgtctgggcg
gcgggcgaaggctggcaccccggcgtggtcggcatcgtcgcctcgcgcctgaaggaggcc
accaaccgccccgccatcgtgatcgggatggacggtgacgaaggcaagggatcggggcgg
tccgtgaccggggtcgaccttggcgcgagcatccagaagctggccgccgaagggctgctg
ataaagggcggcgggcacaagatggccgccggtctgaccgtggcccgtgacaagctggaa
gccgcgatggcgcgcctgtccgagctgcttgaaaagcagggcgcaggatcggccggcccg
ggcgacctgaagatcgacgggttgctgatgcccggtgccgccacccccgaactggtcgac
cagctggaagcggccgggccctacggcgcctcggcccctgccccgcgctttgcctttgcc
ggccagaagatcagctttgccaaacgtatcggcgacacccacctgaagatcagcttcaac
gacggcatgggcaagcgggtcgaggcgatctgctttggcgcctatgacgggccgctcgga
ccggcgctggaacagcatggcgggcggcccttccacctggccggaaagctcgagatcaac
gactggggcggacgccgcaacgtgcagcttcggctggaggatgcagcccccgcgagcgac
ggttag
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