Pseudooceanicola algae: PSAL_020460
Help
Entry
PSAL_020460 CDS
T06943
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palw
Pseudooceanicola algae
Pathway
palw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSAL_020460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palw03021
]
PSAL_020460 (rpoC)
03400 DNA repair and recombination proteins [BR:
palw03400
]
PSAL_020460 (rpoC)
Enzymes [BR:
palw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSAL_020460 (rpoC)
Transcription machinery [BR:
palw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSAL_020460 (rpoC)
DNA repair and recombination proteins [BR:
palw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSAL_020460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QPM90806
UniProt:
A0A418SBV4
LinkDB
All DBs
Position
complement(2184428..2188651)
Genome browser
AA seq
1407 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTYKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMEAQDVYGMDAFT
ANIGAEAIREMLAQIDLESEADTLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIDLRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKHGRFRQNLLGKRVDFSGRSVIVT
GPELMLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIAREGMKGEGMVFSSIDEVQYAL
DTGAVHLHANITARIQQIDEEGNEITVRFETTPGRVRLGALLPMNAKAPFALVNRLLRKR
EVQQIIDTVYRYCGQKESVIFCDQIMRMGFREAFKAGISFGKDDMVIPDNKWEIVEETRG
QVTDFEQQYMDGFITQGEKYNKVVDAWSKCNDKVTEAMMSTISSTKYDESGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTDRAITVSNAVNDGEVVATIGERILGRV
TADDVLRPGTEEVLLKKGQLIDERMADMIQDASVQSMRIRSPLTCEAEDGVCAACYGRDL
ARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASVDGIVEFENAN
LLENAAGEILIVGRNMKLRIMDEHGEERASHKLGYGTKLFVKHGETIKRGDKMFEWDPYT
LPIIAERAGSARYVDLVSGLAVRDETDDATGMTQKIVIDWRAAPKGNELKPEILIVDAEG
EPVRNDAGNPVTYPMSVDAVLSVEDGQDVKIGDIVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRITIEPADESMDPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGQTTLLKGEHVDKIEFDTANQKAEDKGLRPASGQPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRRIASERDNVVVEARRD
EAAAALAAPSAEEPQIESASATSEAGE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaatccgttcaacccgctgaccccgccgaaagtcttcgac
gagatcaaggtatcgctggcctctcccgagcgtatcctctcgtggtcctacggcgagatc
aagaagccggaaaccatcaactaccggacttacaagcccgagcgcgacggcctgttctgc
gcccggatctttggcccgatcaaggattacgaatgcctttgcggcaagtacaagcggatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgttgaagtcacgctgcaaaaagtccgc
cgcgaacgcatgggccacatcgaactggcctcgcctgtggcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacctggaacgcgtg
ctctacttcgagaactacgtcgtgatcgaacccggtctgacggatctgacctatggccag
atgatgaccgaagaagagttcatggaagctcaggatgtctacggcatggacgccttcacg
gcgaacatcggcgccgaggccatccgcgagatgctggcccagatcgacctggaatccgaa
gccgataccctgcgcgcggatctggcggaagccaccggcgaactgaagcccaagaagatc
atcaagcgtctgaaggtcgttgaatccttcctcgagtcgggcaaccgccccgagtggatg
atcatgaccgtgatcccggtcatcccgcccgagctgcgcccgctggtgccgctggacggt
ggccgcttcgcgacctctgacctgaacgacctctatcgccgggtcatcaaccggaacaac
cgtctgaagcgtctgatcgaccttcgtgcgcccgacatcatcgtgcgcaacgaaaagcgg
atgctgcaggaatccgtcgatgccctgttcgacaacggccgtcgtggccgggtcatcacc
ggtgccaacaagcgcccgctgaagtccctgtcggacatgctgaagggtaagcacggtcgt
ttccgtcagaaccttttgggcaaacgcgtcgacttctcgggtcggtccgtcatcgtgacg
ggcccggagctgatgctgcatcaatgcggtcttccaaaaaagatggcgctggagctgttc
aagcccttcatctactcgcgccttgaagcgaagggtctgtcttcgaccgtgaagcaggcc
aagaagctggtcgaaaaggaacgccccgaagtctgggacatcctggacgaggtgatccgc
gaacaccctgtcatgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggccttc
gaaccgatcctgatcgaaggcaaggcgattcagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggtgaccagatggctgttcacgtgcctctctcgctggaagcccag
ctggaagcgcgcgtcctgatgatgtcgacgaacaacgtcctgtcgcccgcaaacggcgca
ccgatcatcgttccgtcgcaggatatgatccttggcctctactacaccacgattgcccgc
gaaggcatgaagggtgaaggcatggtcttctcctcgatcgacgaagtgcaatacgcgctg
gataccggtgcggtgcacctgcacgccaatatcacggcgcgcatccagcagatcgacgaa
gaaggcaacgagatcaccgtccgcttcgagacgacccccggtcgtgtccgcctcggggcc
ctgctgccgatgaacgccaaggcacccttcgccctggtgaaccgtctgctgcgcaaacgc
gaagtccagcagatcatcgacaccgtctaccgctattgcggtcagaaggaatcggtcatc
ttctgtgaccagatcatgcgcatgggcttccgcgaagcgttcaaggccgggatctccttc
ggcaaggacgacatggtcatccccgacaacaagtgggagatcgtcgaggaaacccgcggt
caggtcaccgacttcgaacagcagtacatggacggcttcatcacccagggtgagaagtac
aacaaggtcgtcgatgcctggtccaagtgcaacgacaaggtcaccgaagccatgatgtcg
acgatctcgtcgaccaagtacgacgagtccggcgccgaaatggaaccgaactctgtctac
atgatggcgcactccggtgcgcgtggctcggtcacgcagatgaagcagctgggcgggatg
cgcggcctgatggcgaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgtaagggtctg
tcggataccgctctgaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtg
gcgcaggattgcatcatccgcgagcatgactgcggcaccgaccgtgcgatcaccgtgtcc
aacgcggtcaacgacggtgaagtcgtggcgacgatcggcgaacggatcctgggccgtgtc
acggcagatgacgtgctgcgtccggggaccgaagaggtccttctgaagaagggccagctg
atcgacgaacggatggcggacatgatccaggacgcaagcgtccagtccatgcgcatccgg
tcgccgctgacctgtgaagccgaagatggcgtctgcgcggcctgctacggtcgtgacctt
gcgcgcgggaccatggtcaaccagggcgaggccgtcggcatcatcgcggcccagtccatc
ggtgaacccggtacacagctgacgatgcggaccttccacatcggcggcgttgcacagggt
ggccagcagtccttcctcgaggcctcggtcgacgggattgtcgagttcgagaacgccaac
cttctggaaaacgccgccggcgagatcctgattgtgggccggaacatgaagctgcgcatc
atggacgaacatggcgaggaacgcgccagccacaagctgggctacggcaccaagctgttc
gtcaagcatggcgagacgatcaagcgcggcgacaagatgttcgaatgggatccctatacc
ctgccgatcatcgccgagcgtgcgggttccgcgcgttatgtcgaccttgtctccgggctt
gccgtccgggacgagaccgatgacgcgacgggcatgacccagaagatcgtgatcgactgg
cgggctgccccgaaagggaacgagctcaagcccgagatcctgatcgtcgatgcggaaggc
gaacccgtccgcaacgatgcgggcaacccggtgacctacccgatgtccgtggatgcggtc
ctgtcggtcgaagacggccaggacgtcaagatcggtgacatcgtcgcgcggatcccgcgt
gaaggtgcgaagacgaaggacattaccggtggtctgccgcgtgtggccgaactcttcgag
gcgcgtcgtccgaaggaccacgccatcatcgcggaaatcgacggctacgtccgcttcggt
cgcgactacaagaacaagcgccggatcacgatcgagcctgcggatgagtccatggatccg
gtggaatacatggtgcccaagggcaagcacatcccggttcaggaaggcgacttcgttcag
aagggcgactacatcatggacggcaacccggcgccgcatgacatccttgccatcatgggt
gtcgaagcgctggcggactacatgatcgacgaggtccaggacgtctatcgactgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgggag
atcctcgacagcggccagacgacgctgctgaagggcgaacacgtcgacaagatcgaattc
gacaccgccaaccagaaggccgaggacaagggtctgcgccctgcttccggtcagccgatc
ctgttggggatcaccaaggcctcgctgcagacgcggtccttcatctcggcggcctccttc
caggagaccacgcgggtccttaccgaggcttcggtacagggcaagcgcgacaagcttgtc
ggcctgaaggaaaacgtcatcgtcgggcgcctgatcccggcgggtacgggtggggcaacc
cagcgggtgcgtcggatcgcttcggagcgcgacaatgtcgtcgtcgaagcgcggcgggac
gaagccgcggcggcccttgcggccccctcggcagaagaaccgcagatcgaaagcgcctcc
gcgacttcggaagccggcgaataa
DBGET
integrated database retrieval system
