Candidatus Portiera aleyrodidarum MED (Bemisia tabaci): O3E_00960
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Entry
O3E_00960 CDS
T03834
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paly
Candidatus Portiera aleyrodidarum MED (Bemisia tabaci)
Pathway
paly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3E_00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paly03019
]
O3E_00960
03009 Ribosome biogenesis [BR:
paly03009
]
O3E_00960
Enzymes [BR:
paly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O3E_00960
Messenger RNA biogenesis [BR:
paly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O3E_00960
Ribosome biogenesis [BR:
paly03009
]
Prokaryotic type
rRNA processing factors
O3E_00960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJF24099
UniProt:
A0AAU8S792
LinkDB
All DBs
Position
195698..197323
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AA seq
541 aa
AA seq
DB search
MLINASQPEELRVALVDGQLLYDLDIEYCNKEQRKSNIYRAKIIRIEQSLEAVFVDFGAK
RHGFLPIKEISKEYLLNDCNSNIREIIKEGQELIVQVEKEERSNKGAALTTYISLAGRFL
VLMPNNYRSGGISRRITGTDRFKLKEAIKKLFIPKNMGIIVRTAGIGRSSKDLQCDLNYL
IQIWEAITEEANKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSVYIYNDALNFIKQV
MPTYQKKIKLYKDELPLFTKFKIESQIATAYQREVKLPSGGSIFIDSTEALVSVDINSAR
ATRGDDIEETALHTNLEAADEIGRQLRLRDIGGLVVIDFIDMALTRNQREVENRIRTAFK
VDRARIQLCRISRFGLMEMSRQRIRPSLRENSGIVCPRCNGQGTIREVSSLSLSILRLIE
EEAMKDNSSKIRAVLPVAIATYLLNEKRNIIVKIEVRQNVKIIIIPEQDMESPHYAVERL
RYDQIFGEKYSNKKNLLSKKTTYMEKKIRTEKAAVSIVNHSTVTYNNFITRIWKTLIEKL
Y
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
attcttataaatgcgagccaaccagaagaattaagagttgcactggtagatgggcaatta
ttgtatgatttagatattgaatactgtaataaagaacaaagaaaatctaatatatatcgt
gctaaaatcataagaatagaacaaagcttagaagctgtttttgttgattttggagccaaa
agacatggtttcttacctataaaagaaatatctaaagaatatttattaaatgattgtaat
tcaaatattagagaaataattaaagaaggtcaagaattaatagtgcaagttgaaaaagaa
gaacgtagcaataaaggtgcggctttaactacttatattagtttagcaggtagattttta
gttttaatgccgaataattatagatcaggagggatttctagacggattacaggtactgat
agatttaaattaaaagaagctataaagaaattatttatacctaagaatatgggaataata
gttagaaccgcagggattggccgttcaagtaaagatttacaatgtgatttaaattattta
attcaaatatgggaagcaattacagaagaagcaaataaaagatcggctccattcttaata
tatagagaatctaacgttattattcgtgcaatgcgtgattatttaagacaagatataggt
gaagttttaatagatagtgtatacatttataatgatgctctaaattttattaaacaagtt
atgcctacttatcaaaaaaaaataaaactttataaagatgaacttcctctttttactaaa
tttaaaatagaatctcaaattgcaactgcttatcaacgagaggttaaattgccttcaggt
ggatcaatatttatagattctacagaagctttagtatctgttgatataaattcggcgcgt
gctactagaggtgatgatatagaagaaacagctttacatacaaatttagaagcagctgat
gaaattggtagacagttaagattacgtgatattggtggcttagtagtaattgatttcata
gatatggcgttaacaagaaaccaaagagaagtagaaaatagaattcgtacagcgtttaaa
gttgatcgtgcacgcattcaattatgtcgtatttcaagatttggcttaatggaaatgtca
cgacaacgcattcgtccatctttacgggaaaacagtggtatagtatgtccaagatgtaat
ggacaaggcacaatacgtgaggttagttctttgtctctttctatattacgtttgattgaa
gaagaagctatgaaggataatagttctaaaataagagcggtattgccagtggcaatagca
acttatctattaaatgaaaaaagaaacattatagtgaagatagaagtaagacaaaatgta
aaaattattattattccagaacaggacatggaaagtcctcattatgcagtagaaagatta
cgttatgatcaaatatttggagaaaaatatagtaataaaaagaatcttttaagtaaaaaa
accacttatatggaaaaaaaaatacgtacagaaaaagcagctgttagtattgtaaatcat
agtactgttacatacaacaattttataacacgtatctggaaaacattaatagagaaatta
tattaa
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