Populus alba (white poplar): 118027581
Help
Entry
118027581 CDS
T07314
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
palz
Populus alba (white poplar)
Pathway
palz04142
Lysosome
palz04144
Endocytosis
palz05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118027581
04142 Lysosome
118027581
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118027581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
palz04131
]
118027581
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
palz04147
]
118027581
Membrane trafficking [BR:
palz04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
118027581
Exosome [BR:
palz04147
]
Exosomal proteins
Proteins found in most exosomes
118027581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Totivirus_coat
IcmW
Motif
Other DBs
NCBI-GeneID:
118027581
NCBI-ProteinID:
XP_034886853
LinkDB
All DBs
Position
9:7009312..7020677
Genome browser
AA seq
1702 aa
AA seq
DB search
MAAANAPITMKEALTLSTLGINPQFINFTHVTMESEKYICIRETAPQNSVVIVDMSMPMQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKVKSHQMPEQVVFWKWI
SPKMLALVTQTSVYHWSIEGDSEPVKMFDRTANLQGNQIINYRCDPSEKWLVLIGIAQGP
PERPQLVKGNMQLFSVDQQRSQALEAHAASFATFKVAGNESPSTLISFASRSFNAGQLTS
KLHVIELGAVPGKPSFTKKQADLFFPPDFADDFPVSMQISQKYGLIYAITKQGLLFVYDL
ETASAIYRNRISPDPIFLTTDASSVGGFYAVNRRGQVLLATVNEATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFSQSKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYNPDYLFLLQTILRTDPQ
AAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLYIRALQHYTELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALDCMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLFVNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIES
GDNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWDKALSPDNEYRRQLIDQVVSTALPESKSPDQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAIGEVAVEGQLYE
EAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEEAVWSQVAKAQLREGLVSEAIE
SFIRADDATQFLEVIKAAEDANVYHDLVKYLLMVRQKSKEPKVDSELIYAYGKIDQLGEI
EEFILMPNVANLQNVGDRLYDEALYEAAKIIFRFISNWAKLAVTHVKLKEFQSAVDAARK
ANSSKTWKEVCFACVDSEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFSELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDLLNVI
ALRVDHTRVVDIMRKAGQLRLIKPYMVAVQSNNVSAVNEALNEIYIEEEDYDRLHESIEL
HDNFDQIGLAQKIEKHELLEMRRVASHIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGD
RELSEELLVYFIEQGKKECFAAALFVCYDLIRPDVAMELAWMNNMIDFAFPYLLQFIREY
TSKVDELIKSKLEALNEAKAKENEEKDMVAQQNMYAQLLPLALPAPPMPGMGGPGMGGGF
APPPPMGGMGMPPYGMPPMGPY
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccaatgccccaatcaccatgaaagaggctctaacgttgtcgaccctcggt
atcaacccacagttcataaacttcacgcatgtgactatggaatcagagaagtacatatgc
atcagagaaacggcgccacagaacagcgtggttattgtcgacatgagcatgcctatgcag
cctctaagaaggcctatcactgccgattccgccttgatgaatcctaattctcgaattctc
gctctcaaagctcaactgccgggaactacgcaggatcatttgcagatatttaatatagaa
ctgaaagcgaaagtgaaatctcatcaaatgcctgagcaggttgtgttttggaagtggatt
agccctaagatgctggccctggtaactcagacttcagtttatcactggtcaattgaaggt
gattcggagcctgtgaagatgtttgatagaacagctaatctacaaggcaatcagataatc
aactatcgatgtgatccttcagaaaagtggctggtcctcattggaattgctcaaggtcct
ccagagaggccacaattggtcaaagggaatatgcagcttttctctgtggatcagcagcgt
agtcaggctcttgaagcacatgctgcgtcatttgccacatttaaagttgcaggaaatgaa
agcccttcaacccttatctcttttgcatcaaggtcgtttaatgctggacaactaacatca
aagttgcatgttattgaacttggtgctgtgccaggcaaaccttcatttaccaagaagcaa
gcagacctgttctttccaccagacttcgctgatgattttcctgtgtcaatgcagatatcc
caaaagtatggcttaatatatgcgatcacaaagcaaggacttctatttgtttatgactta
gagactgccagcgcaatttatagaaatcgaatcagtccagatcctatatttttgactact
gatgcttcttcagtaggtggcttctatgctgtcaataggagaggacaggttttacttgcc
actgtaaatgaagcaactattgtgccttttgttagtggccagttaaacaatcttgaactt
gctgttaatcttgccaaaagaggaaatcttcctggagctgagaatctggttgtccagcgg
tttcaagaattattttctcaatcaaagtataaggaggccgcagaacttgccgcagaatct
ccacaaggaatcctccgaactcctgatactgttgctaaattccagagtgttccagttcaa
gctgggcaaacaccaccattgttgcagtactttggaactttgttgactagaggaaagctt
aatgcttttgaatcattggaattatcacgccttgttgtaaatcagaataagaaaaatctt
ctggagaactggttggccgaggacaagcttgaatgcactgaagagcttggagatcttgtg
aagaccgttgataatgacctggcattgaagatatatatcaaagccagggcaactccaaaa
gttgttgcagcatttgctgagaggagggagtttgacaagattcttatatactcaaagcag
gttggctacaaccctgattatttgttcctcctccaaacaatattgcggacagaccctcag
gctgccgttaattttgctctaatgatgtctcaaatggagggaggttccccagttgattac
aacacaataactgatctattccttcagaggaatttgatccgcgaggcaacagcttttttg
ttggatgttctgaagccaaatttgcctgagcatggataccttcaaactaaggttttggag
atcaatcttgtgacatttccaaatgttgcagatgctatattagctaatggtatgtttagt
cactatgatcgcccacgtattggccaactatgtgaaaaagctgggttgtatattcgagca
cttcagcactatactgagttgcctgatattaaacgtgttattgtgaacacacatgccatt
gagcctcaggctcttgtcgagttctttggtactctttctcgagaatgggctcttgactgt
atgaaagatctacttcttgtcaacctgaggggcaaccttcagattattgtgcagactgcc
aaagaatactgtgagcaattgggtgtggatgcatgcataaagctctttgagcagtttaag
tcatatgaaggactgtatttctttttgggttcatatttgagctctagtgaggatcctgaa
atccacttcaagtacattgaagcagctgctaaaactgggcagatcaaggaggtagaacgt
gtgacacgtgaatcgaacttctatgatgctgaaaagacgaagaactttttaatggaagcc
aagcttccagatgcacgtccactgatcaatgtctgtgatcgttttggttttgtcccagac
cttacccactatctgtttgtaaacaatatgcttcgctatattgagggttatgttcagaag
gtcaatccaggaaatgctcctttagttgtaggacaactgcttgatgatgaatgtgctgaa
gatttcattaaaggccttattctgtctgttcgttctcttctgccagttgagcccttggtg
gaggagtgtgagaagagaaatcgcctccgcttgctcactcagttcttggagcatctagtc
agtgagggaagtcaagatgtgcatgttcacaatgctcttggtaaaatcattattgaaagt
ggtgacaatccagagcattttcttactaccaacccatattacgattcacgagtggttggt
aaatattgtgagaagcgcgatcccacccttgctgttgttgcctaccgaagaggacagtgt
gatgatgaattaatcaatgtcacaaacaagaattcattgttcaaactgcaggccagatat
gttgtagaacggatggatggtgatctctgggataaagcccttagtcctgataatgagtac
agaaggcagttgattgatcaggttgtatcgactgctttgcctgaaagcaagagtcctgat
caagtttcagcagctgttaaagctttcatgacagctgatcttccacatgaactgatcgaa
cttcttgaaaagatagttcttcaaaattctgctttcagcgggaatttcaatctgcaaaac
ctgctcatcttgactgccatcaaggctgatccatcaagagttatggattatgttaatagg
ctagacaactttgatggacctgcaattggggaggtggctgtggaaggtcagttgtatgaa
gaagcatttgccattttcaagaagttcaatcttaatgttcaggctgtcaatgtcctgctg
gataatattcatagcattgatcgagctgtggagtttgcattccgggtggaagaagaagct
gtctggagccaagtggccaaggcccaactgcgagaggggctagtaagtgaagcaattgag
tcctttatccgtgcagatgatgctactcaattcttggaagtcataaaggcggctgaggat
gcaaatgtatatcatgacttggtgaagtaccttctaatggtgaggcaaaagtcaaaggag
cccaaggttgacagtgagctcatatatgcatatggtaaaattgatcaactgggtgaaatt
gaagaatttattctcatgcctaatgttgctaatctccaaaatgttggagatcgtttatat
gacgaagccctgtatgaggcagcaaagattatatttagatttatcagtaactgggctaag
ctagctgtcacacatgttaagctaaaagagtttcaaagtgctgttgacgcagctcgaaaa
gcaaacagctcaaaaacatggaaagaagtctgctttgcttgtgttgattctgaggaattc
cgcttggctcagatatgcggtctcaacattatcatacaggttgatgatttggaagaggtc
agtgagtattaccagaacaggggatgctttagcgagctcatctctttaatggaaagtggg
cttggtttggagcgtgcacatatgggcatcttcactgagttgggagttttatatgcgaga
taccgccctgagaagcttatggagcacatcaagttgttctcaactcgtctcaacatcccc
aagctaataagagcttgtgatgaacaacagcattggaaggaactgacatacttatacatc
caatatgatgaatttgacaatgctgcaaccactataatgaaccactctccagaagcatgg
gaccacatgcaattcaaagatgttgtagtgaaagttgcaaatgttgagctctactacaag
gccgtgcacttttacttgcaagagcatccagacctaatcaatgatcttcttaatgtgatt
gcacttcgtgttgaccatactcgagtagtggacataatgcgaaaggctggtcaactccgt
ctcatcaagccatacatggttgctgttcagagcaacaatgtctctgctgtgaatgaagca
ttgaatgaaatttatatcgaggaggaggactatgacagacttcatgaatctattgagttg
catgataactttgaccagataggccttgcacagaagattgagaaacatgagcttcttgag
atgagacgtgttgcttctcatatatacaagaaagcgggaaggtggaagcagtcaattgct
ttgtcgaagaaagacaatctttacaaagattgtatggaaacttgttcacaatctggtgat
cgtgaactttcagaggagttgcttgtctatttcatcgagcagggaaagaaagagtgcttt
gcagctgccctctttgtttgttatgatttgatccgaccagatgttgctatggagctggcc
tggatgaacaatatgattgattttgctttcccatatctcttgcagtttatccgtgagtac
acaagcaaagtagatgagctcatcaagagcaaacttgaggctcttaatgaggcgaaggct
aaagagaacgaggagaaggacatggttgctcagcagaatatgtatgcacagttgctgccc
cttgctttgcctgcaccgccaatgcctggaatgggtggtccagggatgggtggaggtttt
gcaccacctcctccaatgggtggaatgggaatgccaccttatggcatgccacccatgggt
ccctactaa
DBGET
integrated database retrieval system