Populus alba (white poplar): 118027756
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Entry
118027756 CDS
T07314
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118027756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118027756
03016 Transfer RNA biogenesis [BR:
palz03016
]
118027756
Enzymes [BR:
palz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
118027756
Messenger RNA biogenesis [BR:
palz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
118027756
Transfer RNA biogenesis [BR:
palz03016
]
Prokaryotic type
tRNA degradation factors
118027756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
118027756
NCBI-ProteinID:
XP_034887098
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All DBs
Position
19:complement(10454078..10471123)
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AA seq
932 aa
AA seq
DB search
MLANPSTSTLHHRPNYTHNPPCSLSNHRCKLSLSPNCPRFSNSAKSNFSSLSLLLSRRKR
ERLFTVFNAFEETSVAHDAPQSLPQPFSVKIPVGDRHILVETGHIGRQASGSVTVTDGET
IVYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGKLKDHEVLICRLIDRP
LRPTMFKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTEVIAGVRVGLVD
NKFIVNPTTKEMEESELDLLLAGTDSAIFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNE
VGVLVKKCGKAKMLDAIKLPPAELYKHVEEIAGDELVKILQITSKVPRRKALASLEEKVL
SILTEKGYVSKDERFGTPETVADLLEVEDEDEEIVVDGEVDEGDVHIKPIGHKFSPLLFS
EVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQ
SLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVE
RALKPILPSEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGM
VLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMRKA
LLQARDGRKHILAEMLKCSPFPSKRLSKYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEE
TGVEAIDTRDDGIVKITAKDLSSIEKSKSIINRLTMVPNVGDIYRNCEIKSVAPYGVFVE
IAPGREGLCHISELTSNWLPKAEDVFKVGDRVDVKLIEVNEKGQLRLSRKALLPEATPEK
SSAEHHATDKASPRRIVQAPKDGLAEEYKDKDSAVNSPRSDSIKDAPVSKKKVYKGLTSS
ATEEPKKNSAASVSSIASKDEGTLVNGDDKIG
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgctagcgaatcctagcaccagtactctccatcacagacctaattacacgcacaaccct
ccatgttcactctctaatcatcgctgcaagctctctctctccccaaattgccctcgcttc
tccaattctgcaaaatccaacttttcttcgctttctctgcttctatcaagaagaaagcgt
gaaaggttgtttactgttttcaatgctttcgaggaaacttctgtggcacatgacgcccct
cagtctttgcctcagcctttttctgtaaaaatccccgtcggtgacagacatatattggtt
gagacgggtcatattgggagacaagctagtggttctgttactgtgacggatggggaaact
attgtctatacatctgtttgtttggatgatgttcctagtgagccttctgatttttatcct
ctatctgtaaattatcaagagcgattttctgcagcaggtcgaactagtggaggatttttc
aaacgagaagggaagttgaaagatcatgaggttcttatttgtagattgatagataggcct
ttgcgcccaaccatgttcaagggcttttaccatgaaacccagatactatcttgggttttg
agctatgatggtttgcattctcctgattctttggctgtcacagcagctggaatagcttta
gctctttcagaagtaccaaatacagaagtaattgcaggagttcgagttggccttgttgac
aataagtttattgtgaatccaacaaccaaggagatggaagagtcagaattggatttattg
ctggctggtacagacagtgcaatatttatgatagagggttattgtaattttcttacagaa
gaaaagttgcttgatgcagtacaaattgggcaggatgcagtgcgggcaatttgcaatgag
gtgggtgttttggtgaagaagtgtgggaaagctaaaatgcttgatgcaatcaaattacct
cctgctgagctatataagcatgtggaggaaattgctggtgatgaattggtgaaaatattg
caaattacaagcaaagtaccaagaagaaaagcccttgcatcactggaagaaaaggtgctt
agtatacttacagaaaagggatatgtaagcaaggatgaaagatttggaacccctgaaaca
gttgcagacttgctagaggttgaagatgaggatgaggaaattgttgtagatggtgaagtg
gatgaaggtgatgtccacataaagccaattggacacaaattctctcccttgttgttttct
gaggtagatgtaaagctggtatttaaagaagttacatccaaattcttgcggaaacgtatt
gttgagggaggaaaaagaagcgacgggagaactccagacaggatacgtccaattgattcc
agatgtggaatacttcccagagcacacggaagtgctcttttcacacgtggggaaacacag
tcattagcagttgttacacttggtgataaacaaatggcacaaagagtagacaaccttgtg
gacgaagaggaattcaagaggttctatctacagtacttgtttcctccatcatgtgttgga
gaagtgggccggataggagcacctagtagaagagaaatcggtcatggaatgctcgtggag
agagctctcaaacctatattgccttctgaagatgattttccttacacggtacgggttgag
agtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgcttg
gcattacaagatgctggtgttcctgtaaaatgcatgattgctgggattgcgatgggtatg
gttcttgacactgaggaatttgggggtgatggaacgcccctcattctgtctgacataact
ggatcagaagatgcttctggagacatggatttcaaggttgctggaaatgaagatggaata
actgcatttcagatggacataaaggttggaggaatcaccttacctgttatgagaaaggca
ttgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctcacct
ttcccttccaaaaggctttctaagtatgccccattgattcacattatgaaggtcaatcca
aagaaagttaacatcatcattggttctggtgggaagaaggtgaagagtataatagaagaa
actggagttgaggctattgacacacgagatgatggaattgtaaaaattactgcaaaggac
ttgtcaagtatagaaaagtccaaatccattatcaatcggctaacaatggttccaaatgtc
ggtgatatctacaggaactgtgagatcaaatccgtagctccttatggagtttttgttgag
atagccccagggcgtgagggactttgccatattagtgaactaacttcgaactggttgcca
aaggctgaagacgttttcaaagttggagaccgtgttgatgttaaactaattgaggtaaat
gaaaagggacaacttcgacttagtcgcaaagcattgcttcctgaagccactccagagaag
tccagtgcagagcatcatgcaactgataaggctagtcccagaaggattgtgcaagcacca
aaggatggtttagctgaagagtacaaggataaagacagtgctgtaaattccccaagaagt
gattcaataaaggatgctccagtttcaaaaaagaaagtttacaagggattaaccagttct
gccacagaggagccaaagaagaacagtgctgcatctgtcagtagcattgccagcaaagac
gaaggtactttagtgaatggagatgataagattggatag
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