Populus alba (white poplar): 118028729
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Entry
118028729 CDS
T07314
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
palz
Populus alba (white poplar)
Pathway
palz03030
DNA replication
palz03420
Nucleotide excision repair
palz03430
Mismatch repair
palz03440
Homologous recombination
palz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118028729
03420 Nucleotide excision repair
118028729
03430 Mismatch repair
118028729
03440 Homologous recombination
118028729
03460 Fanconi anemia pathway
118028729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
palz03000
]
118028729
03032 DNA replication proteins [BR:
palz03032
]
118028729
03400 DNA repair and recombination proteins [BR:
palz03400
]
118028729
Transcription factors [BR:
palz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118028729
DNA replication proteins [BR:
palz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118028729
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118028729
MMR (mismatch excision repair)
118028729
DSBR (double strand breaks repair)
HR (homologous recombination)
118028729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
CDC24_OB3
DUF223
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
118028729
NCBI-ProteinID:
XP_034888323
LinkDB
All DBs
Position
3:complement(13718069..13721540)
Genome browser
AA seq
854 aa
AA seq
DB search
MNLTEGAISKITSGGATSAELKPTLQVTDLKQVQTKQPQQSDRFRLVLSDGSHLQQAMLG
TQINHLVKDGNLRIGSIVQLNQYTCTTVQGRMIIIILELTLVAEECELIGNPVSAQRSSG
PSPSPVAQPGNVNASPKSFGTNSVTGGVVGNQNMSAAPVQSPEINQFHNASPSSNYGPGR
FAPTNAPPLYSKVEATAGSVPSSGLYVNQNAGYPNPRPEISQPHMGSYSRPPQSAYQQPP
PMYSNRGPVARNEAPPRIIPITALNPYQGRWTIKARVTAKGELRHYNNTRGDGKVFSFDL
LDSDGGEIRVTCFNQVADQFYHQIEAGRVYLISKGNLKPAQKNFNHLRHDLEIFLESTST
IQPCFEDDNTIPKQQFHFRPISDVEDMENNSVVDVIGVVTSIAPTTSLMRKNGTETQKRT
LQLKDMSGRSVELTLWGNFCNAEGQRLQHICDSGGFPVLAVKSGRISEFSGKAVGTISTS
QLFIEPDSPEANRLKEWFDREGRNTPSLSISRETSTLGRSDVMKTISQIKDERLGTSEKP
DWITVPATVIYVKSDNFCYTACPIMSGERPCNKKVTNNGDGKWRCEKCDQSVDECDYRYI
LQLQIQDHTGITWVTAFQECGEEIMGISAKDLHYLKHEQQDDEGFSKVLRQVLFSRYVFK
LKVKEETFSDEQRVKSTVVKSEKVNYSSQSRLLLDMMEKFKSGNDTSFGCKAESSYHNPG
VNNAVIGNSGIRQAGPPGSNPVGSTSYAGNVGLPANQLGQYGNQQNPVFPMQSSSGGYLS
CNSCGATSHSSANCPSMVNAPGQSMGGSYAKRTSQGGTGECYKCHQVGHWARDCPGLSSS
GKMGGISKQHVGGF
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgacggaaggagcaatatccaagataacgagcggaggagccacctcggccgaa
ctgaaaccgacgctgcaagtgacagatttgaagcaggtgcagacgaagcaaccgcaacag
agtgatcggtttcggttggttttatctgatgggtctcatttgcaacaagctatgcttggg
actcaaattaatcatttggttaaagacgggaacttgcggattggttctattgttcagttg
aatcagtatacttgtactaccgttcaaggccgcatgattattattattctcgaattgacc
ctggtagctgaagaatgtgagttgattggaaatcctgtatcggctcaaagatcttcaggg
ccttcaccatcaccagttgctcaaccaggaaacgtcaatgcaagtcctaagtcatttggt
accaactcagttactggtggtgtggttgggaatcaaaatatgtctgcagcacctgtacaa
agccctgagataaatcagtttcataatgcatccccttctagcaattatggcccaggaagg
tttgctccaacaaatgctccaccactttattcgaaagtagaagctactgctggatcagtt
ccatcaagcgggttgtatgttaatcagaatgcaggttaccctaaccctagaccagaaatt
tcacagcctcatatgggaagttattctcgccccccacagtcagcatatcagcaaccaccg
ccaatgtacagtaacaggggaccagttgctaggaatgaggctcctccaaggatcattcca
ataacagcattgaatccataccagggtaggtggactattaaggctagggtgactgcaaaa
ggagagctcaggcattataataacactcgtggtgatggtaaagttttctcctttgatctt
cttgattctgatggcggagagatcagagtgacctgctttaaccaagtggctgaccaattc
taccaccagattgaagctggcagggtttatttgatttccaagggaaatttaaaacctgct
caaaagaatttcaaccaccttcgtcatgatctagaaattttcctggagagcacttcaacc
atacagccatgctttgaggatgacaacacaattccaaagcagcaatttcattttcgtccc
attagtgatgttgaagacatggagaacaatagtgttgtggatgtaattggggtggtaaca
tccattgctcccactacttcgttaatgagaaaaaatgggacagaaactcagaagagaacc
ctccaattgaaggatatgtctggtcgaagtgttgaattaactctctggggaaatttctgc
aatgctgagggtcaaaggctacaacacatctgtgattcaggaggtttccctgttcttgct
gtcaaatcaggtagaatcagtgaatttagtgggaaggcagtggggactatatctacaagt
cagctatttatagaaccagattctccagaggctaacaggctaaaggaatggtttgacaga
gaagggaggaacactccttctctttcaatttctagggaaacttcaactttgggtaggtca
gatgtcatgaagactatttctcaaataaaggatgagaggctaggaacatctgagaagcct
gattggatcactgtccctgcgactgttatatatgttaagtctgacaatttctgctataca
gcttgccccatcatgtcaggggaacggccatgcaataaaaaggtcaccaataatggagat
gggaagtggcggtgtgaaaagtgtgatcaatctgtggatgaatgtgactacagatatata
ctccagttacagatacaggaccatactggcataacatgggtgactgcattccaggaatgt
ggtgaggagataatgggtatatctgcaaaagatttgcattatttgaagcatgaacagcaa
gatgatgagggattttcaaaagtacttcgccaagttctgtttagtagatatgtattcaag
ttaaaagtaaaggaggaaactttcagtgatgaacagcgtgtaaagtctactgttgtcaaa
tcagaaaaggtgaattattcatctcagtccaggcttcttctggatatgatggagaagttt
aaatcagggaatgatacttcttttggctgcaaagcagaatctagttatcataaccctggt
gtgaataatgctgtaattggaaattctggaatcagacaagctggacctccaggatcaaac
cctgtggggagcaccagctatgctggtaatgttgggttaccagcaaatcaattgggtcag
tatggaaaccagcaaaaccctgtgttccccatgcaaagttcttccggtggttatctaagc
tgcaacagctgtggggccaccagtcatagctcagcaaattgcccaagtatggtgaatgct
ccggggcagtctatgggagggagctatgccaagagaacatctcaggggggcactggtgaa
tgctataaatgccatcaagttgggcactgggcaagagactgccctgggttaagcagctct
ggcaaaatgggaggtatttcaaagcaacatgtgggtggtttctga
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