KEGG   Populus alba (white poplar): 118029312
Entry
118029312         CDS       T07314                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
palz  Populus alba (white poplar)
Pathway
palz03030  DNA replication
palz03410  Base excision repair
palz03420  Nucleotide excision repair
palz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118029312
   03410 Base excision repair
    118029312
   03420 Nucleotide excision repair
    118029312
   03430 Mismatch repair
    118029312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:palz03032]
    118029312
   03036 Chromosome and associated proteins [BR:palz03036]
    118029312
   03400 DNA repair and recombination proteins [BR:palz03400]
    118029312
DNA replication proteins [BR:palz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118029312
  DNA Replication Termination Factors
   ELG1-RFC complex
    118029312
Chromosome and associated proteins [BR:palz03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118029312
DNA repair and recombination proteins [BR:palz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118029312
  Check point factors
   HRAD17(Rad24)-RFC complex
    118029312
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_14 AAA_5 AAA_24 AAA_assoc_2 SLFN-g3_helicase AAA_2 ResIII nSTAND3 AAA_19 DUF3853 AAA_30 DNAX_ATPase_lid PhoH AAA_28 AAA_25 RNA_helicase AAA_7 Parvo_NS1 DUF815 NPHP3_N TIP49 bpMoxR AAA_17 AAA_18 IstB_IS21 NB-ARC AAA_23
Other DBs
NCBI-GeneID: 118029312
NCBI-ProteinID: XP_034889064
LinkDB
Position
5:complement(17341136..17345028)
AA seq 342 aa
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELNKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS
NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI
PREVTEAIYAACKSGDFDVANKEVKYVIAEGYPVSQMLAQLFEVVVEEDDISDEQKVRIC
KSLAMADKCLVDGADEYLQLLDVVSNTMRALCNMPQEFSYDI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccattattgcagagctcacagccatgggtggagaaatatcgaccaaagcaagta
aaggatgtagctcaccaagatgaggttgttcgcgtcctcactaacactctcgagaccgca
aattgcccacacatgcttttttatggcccacctggtaccggaaaaaccaccactgccctg
gccatcgcacaccagctctacgggcctgaactcaacaagtctagggttctggaactaaat
gcaagtgatgaccgtggaatcaatgttgttcggactaagatcaaggattttgctgctgtg
gctgtaggttctggtcagcgtcaaggggtttacccttgtccaccttataagattatcatc
ctagatgaggcagattcgatgactgaagatgctcagaatgccctgagacgtacaatggaa
acttactccaaagttactagattcttcttcatatgtaattacattagcaggatcatagag
ccacttgcttcaagatgtgcaaaattcaggttcaagccacttccagaagaaatcatgagc
aatcgtatattgcacatttgtaatgaagaaggcctcactctggacacagaggctctctca
accttaagctctgtctcacaaggtgatcttcgccgggctatcacatacttgcaaggagct
gctcgcctatttggatcgtcaatttcatccaaagacctcataagtgtgtcaggggccatt
ccacgagaggttactgaggcaatttatgcagcatgcaaaagtggtgactttgatgtggcg
aacaaggaagtaaaatatgtaattgcagaaggatatccagtctctcagatgcttgctcag
ttatttgaggtggtggttgaagaagatgacatatcagatgagcaaaaggttcgcatatgc
aagagtttggctatggctgataagtgtcttgttgatggtgcggatgagtatttgcagctg
ctggatgtggttagcaacacaatgcgagctctttgcaacatgccacaagaattctcttat
gatatttag

DBGET integrated database retrieval system