Populus alba (white poplar): 118029321
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Entry
118029321 CDS
T07314
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
palz
Populus alba (white poplar)
Pathway
palz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118029321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118029321
03036 Chromosome and associated proteins [BR:
palz03036
]
118029321
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118029321
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118029321
PBAF complex
118029321
GBAF(ncBAF) complex
118029321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
118029321
NCBI-ProteinID:
XP_034889078
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All DBs
Position
5:17307617..17314245
Genome browser
AA seq
796 aa
AA seq
DB search
MPASPSFPSSDGRGKWKRRKRGDSQITRKPPKHHHQEETEEPEEEDDAVEADDNNNNVID
REDSDDPNPNQQPSGPDPNPQETEVLIDGGVRLCDFPPVTRLAVNRPHASVMAIVAAERA
SLAGESINRGQLVVNLENVSYGQLQAVSAVIADCDGSDLERSDGGNTGYVVTPPQIMDGK
GVVKRFWSRVHLVPMHSDWFSPALVNRLERQVVPHFFSGKSPDHTPEKYRECRNRIVAKY
MENPEKRLTVPDCQGLVVGIDNEDFTRIFRFLDHWGIINYCAAPPSCEYWNGGSYLREDP
NGEVHVPSAALKSFDSLIQFDKPKCRLKAADVYSSLSCHDDDLSDLDNRIRECLSENRCN
HCSQLLPSVCYQSQKEVDILLCPDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGESWSDQ
ETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGLLENVEVPSMPNSISPS
NREDNRRPHSSSNGSCLQGADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLE
VLSADNRLGSERLHGREGGFHGEVANSIQLEEDSQHGSRGQNGAEVAPLSAEKVKAAAKA
GLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKAR
QRFAAERIRMLSTRITPAGVASQMNPAGVAPSMVNNNAGNSRQQVMPSSSSQPSISGYGS
SNPAHPHNNQQVHSHMSYMQRGQPQPMFPLGPRLPVAAIQPSSPAQSNVMYNASGNSQPN
LNQMLRSVSGPSSGLG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccttctttcccttcctcagatggtaggggcaaatggaaaaggcgaaag
cgaggagattctcaaattacacgaaaacctccaaagcaccaccaccaagaagaaacagaa
gaacccgaagaagaggacgacgccgttgaggcagacgacaataataacaacgttatcgac
agagaagattctgatgacccgaacccaaatcaacagcccagcggacccgatccaaaccct
caagagaccgaggttttaattgatggtggggtccgcttatgcgatttccctcctgtcacg
aggctcgctgtgaaccgccctcatgcctccgtgatggcgattgtggccgccgagagggcc
agcctggctggggaaagcattaatagagggcaattggtggttaatttggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgatagcggactgtgatgggagtgatttggag
aggagtgatggagggaatacagggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttctggagtagagttcatttggttcctatgcattcagattggttt
tcaccggccttggtaaatcgactggagagacaagtggtgccacattttttctctggaaaa
tctccagatcacacaccagagaaatacagggagtgtagaaatcgcattgttgctaaatac
atggagaatccagagaagaggctcacagttcctgattgtcaaggattggtagttggcatt
gacaatgaagattttactcgaatttttagatttcttgatcattggggaattataaactac
tgtgcagctccaccaagttgtgaatattggaatggggggtcttatttaagggaggatcca
aatggtgaggttcatgtgccatcagctgctttaaagtcttttgatagtttgatccaattt
gacaagcccaaatgtaggctcaaggcagctgatgtttactcatcattgtcatgtcatgat
gatgatctctctgacttggacaacagaattcgtgagtgcttatctgaaaatcgttgcaat
cattgttctcagcttcttccctctgtgtgctaccagtcacaaaaggaggttgatatactg
ttatgccctgactgcttccatgaggggagatttgtgactggtcattcaagcttagatttt
attaaggtggattcaacaaaagattatggtgatatagatggggaaagttggagtgatcag
gaaacattactgctacttgaggcaatggaaatttacaatgagaattggaatgaaattgca
gagcatgttggcaccaagtcaaaagcacaatgcatccttcattttctccgtctgcctgtg
gaggatggcctgttggaaaacgttgaagttccaagcatgcccaactcaatcagtccatca
aatagagaggataacagaagaccacactcaagttcaaatggatcctgcctccaaggtgct
gatgctgaaaacaggctcccttttgcaaattctggcaatccagttatggcattggttgct
tttctggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttggaa
gtgctgtctgcagataataggttgggttcagagagactacatggtagagaaggtggtttt
catggagaagttgcaaattcaattcaactagaagaagatagccaacatggctcacggggt
caaaatggggctgaggttgctcctctttctgctgaaaaagttaaagctgctgccaaagct
ggccttgctgctgcagcaacaaaagctaaactgtttgccgatcatgaagagcgagaaatt
cagaggctttctgctaatataataaatcatcagttgaagagattggagcttaagctgaag
caatttgcagaagtggaaacctttctaatgagagagtgcgagcaagtggagaaggcaagg
cagaggtttgctgctgagcgaatccgcatgctatctacccggataacacctgcaggagtc
gcttcacaaatgaacccagcaggtgttgctccttcgatggttaacaataatgctggcaac
agtaggcagcaggtgatgccttcctcttcttcgcaaccaagcatttcaggatatggcagc
agtaacccagcccatccacacaacaatcaacaagtccattctcacatgtcatatatgcaa
cggggacagccacaaccaatgtttccattagggccgaggctgcccgtggctgctatacag
ccatcgtcgccagctcagtcaaatgtcatgtacaatgcctctggaaattcacagcctaac
ctcaatcaaatgctgcggtctgtgtcaggccctagctctggtttaggttga
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