Populus alba (white poplar): 118029451
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Entry
118029451 CDS
T07314
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118029451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118029451
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118029451
mRNA degradation factors
5'-3' decay
Decapping complex
118029451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
WD40_WDHD1_1st
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
118029451
NCBI-ProteinID:
XP_034889236
LinkDB
All DBs
Position
11:23087982..23096399
Genome browser
AA seq
1267 aa
AA seq
DB search
MHPQRSLSYPTPPLTPNEQLQDRSGAEILALLRHPQNQEPPPLPPPAQDLSGALSNNFVG
PVRTPSCTSSKMPKGRRVVGEDVVYDVDVRLPGEAQPQLEVTPITKCISDPHPCLGRQIA
VNKSYICYGLKQGTIRILNINTALRSLFRTQSQRVTCMAFFAEDVHLLASAGIDGRINVW
KISEGPDEEDKPQITGKTIIAIQVVGEGEIKNPKVCWHCYKQEILVVGVGKRVLRIDTNK
VGKGEVYSSEAPLQCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTCLVSSSMDGTIKIWE
DLKASPLVVLRPHDGQPVYSAMFLTATDQPDHIILVTAGPQIRELKIWVSASEEGWLLPN
DSDLLNCTQTLELKSSAEPRVEEAFCNQVVALSQMGLILLANAKRNAIYAVHLDYGPNPA
STHMDCISEFTVTMPILSLTGMSDVQHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENV
GSERSDSSVMHDVPNADGYATLESCGSKYSDVLMSSASVGVATLQQDAPTSNMESRTIAL
ASSTSDAGIVCAPSPPYPRLTRDGTEFAVGGRFEPSPASSNQPAINHSVDQQMDPICSNS
SNVPSLDSDLRNDERKIVQDNNSTTLNLPVTFKHPTHLITPSEILMGASSSEITKVNEGK
SEVDSNFLDVVVNNDVANAEVEVKIVGETRSTQDGEFSLRGESKRPVFENKEKIICSQAS
DLDIEMTRECCALPPETKIVEEQGQVDGVGVSVSESLSPPSNAGKDEVHDSTKDVSGKVS
ESSVSTVGPLSTTPSTKGKKQKGRNSQASGSSSQPPGTFKSADSLNEPVGASNLLAMDGA
FSQILAMQQSINQLAIAQKEMHKQMPNMVAVPVSKECRRLETALGRSIEKAIKANTDAPC
AQFQEENAKSERLLQDHMQQITSLVLNFINKDLPAMLEKAPKKELASVVQGAVRTISPVI
EKTVSSVIVESFKRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDSLKAGL
EASVIPAFEMSCKAMFDQVDAAFQRGMIEHTAAAQQHFEASHSSLAFTLRDSINSASSLT
KTLSMELADSQRQLLAIAASSGATNPLATQPSNGPLASSHEKVETQLDPTKELRRLISEC
KYDEAFTIALQRSDLAIVSWLCSQVDLQDIMSLSPLPLSQGVLLSLLQQLACDINNDTPR
KLEWMTAVAAAILPTDQMVVLHAQPIVEQVVEIVNRARTSPAVTGAELASIRVLMHVINY
LLVTCKR
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgcacccccaacgttccctctcctatcctacaccccctctcaccccgaacgaacaactc
caagaccgttctggtgccgaaatcctggccctcctccgccaccctcaaaatcaagaacca
ccaccactccctccgccagcccaagacttatccggggctcttagcaataattttgtgggt
cctgttaggacgcctagctgtactagcagtaagatgcctaagggcaggagggtggttggt
gaagatgtagtgtatgatgtggatgttaggttgccaggagaggcacagccgcagcttgaa
gttacgccgataaccaagtgcatttcggatcctcatccgtgtttaggaaggcaaattgct
gttaataagagttatatttgctatgggttgaagcaagggactattcggattcttaatatc
aatactgcgttgaggtctttgtttcggactcagtctcagagggtcacttgcatggctttt
tttgctgaggatgtccatcttttggctagtgctggaatagatggacggattaatgtctgg
aagatctctgaaggtccagatgaggaagataagccacagattacaggaaagactattatt
gctatccaagtagttggcgagggggaaataaagaacccaaaagtttgttggcattgttat
aaacaggaaattttggtggtcggagttggtaaacgagttctgagaattgatactaacaaa
gttggaaagggtgaggtctattcctccgaggcacctcttcaatgtcctgttgacaagctg
attgatggggtccaattcattggtaaacatgatggagaagtcactgatttgtcaatgtgc
caatggatgaccacctgtttggtttcttcttctatggatggcacgataaagatttgggag
gatctcaaggcatcaccacttgtggttttgagaccgcacgatggccaacctgtttattca
gccatgttcttgactgcaactgaccagccagatcacatcatacttgtcacagcagggcct
cagattagggaattgaagatttgggtctcagccagtgaagaaggctggctcctgcctaat
gattctgatttgttgaattgcacccagacattagagctgaagagttcagctgaacctcga
gttgaggaggcattctgcaatcaagtagtagcattgtctcaaatgggccttattttactt
gcaaacgcaaagaggaatgctatatatgctgtgcacttagattatggtcctaatccagca
tcaactcatatggattgcatatcagagtttactgtcactatgcctatcttgagtttaact
gggatgagtgatgtccagcatggccaatctgttgctcaagtttattgcgtacagacacag
gcaattcaacagtatactttggaattatgccagtgcctgccacctttgatggagaatgtg
ggttcggagaggtcagattccagtgtaatgcatgatgtacctaatgctgatggatatgct
accttggagtcatgtggaagtaaatattctgatgttcttatgagctccgcatcagttggt
gtggccactctgcaacaagatgctcccacttcaaatatggaatccagaactattgcttta
gcctcatcaactagtgatgctggtattgtttgtgctccttcgcctccttatcctcgctta
actagagatggtactgagtttgcagttgggggaagatttgagccaagtcctgcatccagc
aaccaaccagctatcaatcattcagttgaccagcaaatggaccctatttgttcaaattca
tccaatgtgccttccttggatagtgacttgaggaatgatgagaggaaaattgtacaagat
aataattctaccactcttaatcttcctgttacatttaaacatccaactcatctaataacc
ccttctgagattttaatgggtgcttcatcctctgaaattaccaaagttaatgagggcaaa
agcgaggttgactcaaattttctggatgtggttgtcaataatgatgttgccaatgctgag
gtggaagttaaaatagtgggtgaaacaagatccactcaagatggtgaatttagtcttcga
ggagaatccaaaaggcctgtttttgaaaacaaggaaaaaataatttgctcccaggcttca
gatcttgatattgagatgacaagagagtgctgtgcgttgccaccagaaacaaaaattgtg
gaggaacagggacaagttgatggtgttggtgttagtgttagcgagtctctttccccacct
tctaatgctggcaaagatgaagtccatgactcaacaaaagatgtatctggaaaagtttct
gagtcttctgtgtcaacagttggtccactgtcaactactcctagtacaaaagggaagaag
cagaaggggagaaattctcaagcatcaggttcatcttctcaacctccaggtacttttaaa
tcagcagattctttgaacgaacctgtcggggcttcaaatctccttgctatggatggtgct
ttttctcaaattttggcaatgcagcaatcgattaatcagctagcgatcgcacaaaaggaa
atgcataagcagatgccaaatatggttgcagtccctgtttctaaagaatgtagaagacta
gagacggctttgggacggagcattgagaaagccatcaaagcgaatactgatgctccgtgt
gctcaatttcaagaagagaatgcgaagagtgagaggttattgcaagatcacatgcagcag
ataacaagtctggtcttgaattttatcaataaggacttgccagccatgttagagaaagca
ccgaagaaagaattggcttcagttgtacaaggtgcagttcgcacaatatctccggtcatt
gagaaaacagtatcttcagttatagttgagtctttcaagagaggagttggtgataaggca
gtgaatcaactggaaaaatcagttaattcgaaacttgaggctactgttgctaggcaaatt
caagcacagtttcaaacttctggcaagcaagctctccaggattccttgaaggctggtctg
gaagcctcagtaattcctgcctttgagatgtcatgcaaagccatgtttgatcaagtagat
gctgcctttcagagagggatgatcgagcatacagctgcagcacagcagcattttgaagct
tcccattcttctttagcattcactttaagggattcaatcaactcagcatcgtcgttgaca
aaaaccttgagtatggagctggctgatagtcaaagacagctgttagctattgccgcaagc
tcaggtgcaacaaatccattggccacgcaacctagcaacgggcccttggctagctcccat
gagaaggttgaaacacagttggatccaacgaaagagctaagaagattaatatctgaatgc
aaatacgatgaggctttcactattgcgctccaaagaagtgacttggctattgtatcctgg
ctgtgcagtcaggttgatttgcaggatatcatgtctctgtctcccctcccactaagccag
ggagtcttgctctctctgctgcagcagctggcctgtgatataaacaacgatactccccga
aagcttgagtggatgacggcggtggcagctgcaatactgccaactgaccaaatggttgta
ttacacgcacagccaattgttgagcaagtggttgagattgtgaaccgtgcaaggacctca
cctgccgtcactggtgccgagcttgcaagcatccgcgttctcatgcatgtcattaattac
ttgctggtgacctgtaaacgatga
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