Populus alba (white poplar): 118030219
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Entry
118030219 CDS
T07314
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
palz
Populus alba (white poplar)
Pathway
palz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118030219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palz03400
]
118030219
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118030219
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
118030219
NCBI-ProteinID:
XP_034890122
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All DBs
Position
12:6158284..6166749
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AA seq
944 aa
AA seq
DB search
MGENNNFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIA
KTYYHTTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVK
SGTPGNLGSFEDVLFANNDMQDSPVVVALLLNFRENGCTVGLSYVDLTKRVIGLAEFLDD
SHFTNVESALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQD
LGRLVKGPLEPVRDLVSGFEFAPGALGALLSYAELLADENNYGNYRIRKYNLDSYMRLDS
AATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQ
AFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYD
GQFSSLIKEKYLEFLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKA
EQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRITKKEEPKIRKKLTTQFIV
LETRKDGVKFTNTKLKKLGDQYQKIVENYKSHQKELVSRVVQITATFSEVFENLSGLLSE
MDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGK
SWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATISVRDCIFARVGAGDCQMRG
VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFA
THFHELTALAHQKADQEPHAKQIVGVENYHVSAHIDSSNHKLTMLYKVEPGACDQSFGIH
VAEFANFPESVVALARQKAAELEDFSPAAIISDDAREEVGSKRKRECNMDDMSKGAARAH
RFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQFF
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaataacaattttgaagaacagaacaagctccctgagctcaagctagatgct
aagcaggctcaagggtttctctctttcttcaaaaccctaccccatgaccctagggcggtt
cgggtctttgataggcgggactattatacagttcatgctgaaaatgcgaccttcattgca
aagacatactaccacactacaactgctttgcgccagttggggagtggatctaatggtctt
tctagtgtgagcattagtaagaacatgtttgaaacaattgcccgggatcttcttttggag
agaacagaccatactcttgagctctatgaagggagtggatccaattggaaactagtgaaa
agtgggactcctggaaatcttggcagttttgaagatgttttgtttgcaaacaatgacatg
caggattctcctgtggttgttgcactcttgttaaacttccgtgaaaatgggtgcactgtt
gggttgagttatgttgatttaacaaaaagagttattgggctggctgaatttctagatgat
agccactttacaaatgtcgagtcagctttagttgccctcagttgcaaggaatgccttttg
cccatggagagtggcaagtccaatgactgcagaactctgcatgatgttttgaccaaatgc
ggtgtgatgttaactgagagaaagaaaaatgaattcaaaacaagagatttggtgcaggat
cttggtaggcttgtcaaaggtccccttgaaccagtccgagatttagtttctggttttgaa
tttgcacctggtgctttgggagcattattgtcctatgcagaattacttgcagacgagaac
aattatggtaattatagaattagaaagtacaatcttgacagctacatgagacttgattct
gctgccacgagggcactgaatgtccttgaaagcaaaactgatgcaaacaaaaattttagt
ttatttggtctcatgaatagaacttgtacagctgggatgggaaaaagattgcttcatatg
tggctaaaacagcctttattggaagtagatgcaatcaactccaggctagatttggtgcag
gcatttgtggacgataccgggcttcgccaagatctaagacagcatctgaaaagaatctca
gatattgaacgactgatgcacattgttgagaaaggaagagctggcttgcaccatattgtg
aaactttatcagtccatcataagactgccatacattaaaggtgctctggaacgatacgat
ggccaattttcatcccttatcaaggaaaagtatttggagttccttgaggtgtggactgat
gataaccacttgaataagttcattgcacttgttgaaactgctgttgacctagatcaactt
gacaatggggaatacatgatttcacctggttatgaagctgccttaggtgcactaaaagct
gaacaggagtcattggagcaccagatacacaatttgcataaacaaactgcttctgatctt
gaccttcctctagataagggattgaagttagataagggaacgcaatacggtcatgtcttc
cgaattacaaagaaggaagagccaaaaatacggaaaaagctgaccacccagtttattgtc
cttgaaactcgtaaggatggggtaaaattcacaaacacgaaacttaaaaaattaggtgac
cagtaccaaaagatagttgagaactataagagtcatcagaaggagcttgtcagtcgagtg
gttcaaattacagcaactttctctgaggtgtttgagaacttatctggcttgctttctgaa
atggatgtcttacttagttttgctgatttggcttctagttgtcctactccatacacaagg
cctgacatcactccatctgacgtgggagatattatattagaagggagtagacatccatgt
gtggaagctcaggattgggtgaattttattccaaatgattgcaaacttgtcaggggaaag
agttggttccaaataatcacagggcctaatatgggtgggaaatccacatttattcggcaa
ataggtgtgaatattctcatggcccaagttggttctttcattccctgtgacaaggctact
atttctgtacgtgattgcatttttgcacgtgtgggtgctggtgattgtcaaatgcgtgga
gtttctacttttatgcaagaaatgcttgaaactgcttcaatccttaaaggagcaacagat
aggtcattgataatcattgatgagttaggccgcgggacatcaacttatgatggatttggc
ttggcatgggccatatgtgaacacctggttcgagagttaaaagcacctactttatttgca
acccactttcacgaactgactgcattagctcatcaaaaagctgaccaggagccacatgcg
aagcaaattgttggtgttgaaaactatcatgtcagtgcacacatcgactcatcaaatcac
aagttgaccatgctgtacaaggttgagccaggggcttgtgatcaaagttttggtattcat
gttgcagaatttgctaactttcctgaaagtgttgttgcccttgcccgacaaaaggctgct
gaattggaagatttctcacctgctgcaatcatttcagatgatgctagagaagaggttgga
tccaaacgaaagagagagtgcaatatggatgatatgtcaaaaggtgcagctcgggctcac
cggtttctgaaggacttctctgatttgccattagacacaatggacttgaagcaggctctg
ctacagataggcaaactgaaagatgacttggagaaagatgcagtaaattgccattggctc
cagcaattcttctag
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