Populus alba (white poplar): 118030690
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Entry
118030690 CDS
T07314
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03440
Homologous recombination
palz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118030690
03460 Fanconi anemia pathway
118030690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palz03032
]
118030690
03400 DNA repair and recombination proteins [BR:
palz03400
]
118030690
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
118030690
DNA replication proteins [BR:
palz03032
]
Eukaryotic type
DNA Topoisomerases
118030690
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
118030690
FA (Fanconi anemia) pathway
118030690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
118030690
NCBI-ProteinID:
XP_034890794
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Position
5:complement(4946423..4959844)
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AA seq
925 aa
AA seq
DB search
MIKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGH
LMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDRE
GENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDL
RIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW
TINCTHRSDEGLASFSWMRGHLFDYTSSVILYEMCVEEPTATVTKVQQQEKLKYPPYPLS
TIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHPV
WGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESRWSQDHHVVHFLILRLYE
LVVRHFLACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTHV
QGQQFIPATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDA
NTRFSPTNLGEALVMGYDDMGYELWKPNLRSLMEYDMKEVSVGNKSKAEVLATCLQQMKA
CFLDAKVNKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFM
VGCSGFPQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGC
IGGCDETLRQLIEICGTGSRVQARGRPPTTTPSNGPPTTTPSNPQRSNSRQAPCIYCYQT
GHASTDCPSRISATRHVQSHGMNQQNGESSIPCSTCGTPCVLRTANTANNRGRKFYSCSS
QACNFFVWEDSLNNGSAPRSAPRQNISSSASNPSRRGGRGRGVQNAGRAGDVTFVSATGE
PISGRRCFVCGDPSHFANACPSRGS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagttctgaacgtggcggagaagccttctgtggcgaaatcggtggcgacgata
ctctcacgaaatcagcttcgagtgagagacggacggtcccggtacaacaagatattcgag
ttcaactactccattaatggccaacaatgccacatgcttgtcacttccgtcactggtcat
ctcatggaagtcgaattcgaagatagattccgtaaatggcattcttgtgaccccgccgat
ctctacaccgctcccgtccgcaaatacgtccctgaggataagttggacatcaaaaggaca
ttggaggaggaagcgaggaggtgtcattggcttgttttgtggttagattgtgatagagaa
ggagagaacattgcatttgaagtgatggaagtttgtaaaggtgtaaatagaaatcttaca
ataaggagggctcggttttcggctctaattgagagggatattcatgaagcagcccaaaat
cttattgctcctaatcagtggttttcagatgcagtggacgctaggcaagaaattgatctc
cgaataggtgcttctttcactaggtttcaaacgatgttgttgagggataggtttgttatt
gattctgctcaagatgatagaaatcttgttctaagttatgggccttgtcagttccctacc
cttggatttgttgtggaacgttactgggagatacaatcacatgagccagaagagttttgg
actatcaattgtactcatagatcagatgaaggccttgcttctttcagttggatgcgtgga
catctttttgattatacctcatctgttatactttatgaaatgtgtgttgaggaaccaact
gcaacagtcacgaaggtccagcagcaggagaagttgaagtatcccccatatcctttgagt
acgattgagcttgaaaaacgtgcttcacggtacttccggatgagttctgaacaaaccatg
aaggtggcagaagacttgtaccaagctggtttcattagttatcctcgtacggagactgac
agcttttcttccaggactgatttgcatacaattgtacaagaacaccaagagcatcctgta
tggggatcgtatgcacaaagattgttagatcctggagcaggactttggaggaaccctagt
aatggtggacatgatgacaaggcccacccacccatccacccaacaaaattttcagctgga
gaatcccggtggagtcaagatcaccatgtagtccatttcttgatacttagattgtatgag
ctggttgttcgacattttctggcatgtgtctcacagccagctgttggggctgaaactgtt
gttgaaattgatattgctggtgaacgtttttctgcatcagggagagtgatattagctaaa
aattacttggatgtttaccgctttgaatcatggggtgattcaatgattccaacccatgtc
cagggacaacagttcattccggcaacattgactttggactctggagtcactagaccacca
cctctcttaagtgaagcggatttgttaagttgtatggacaaggccgggattggtacagat
gcaacaatgcatgatcacattaaaaagctgcttgatcgattctacgtcacaaaggatgcc
aacactcgcttctcacctactaatcttggcgaggcacttgttatgggatatgatgacatg
gggtatgaactttggaaacccaatctgagatcactgatggagtatgatatgaaagaggtc
agcgtgggcaataaaagtaaagctgaagttttggcaacttgcttgcagcagatgaaagct
tgtttcttagatgcaaaggtaaacaaagtaaaactcttggaagccatggcaattttcttt
aatagatctgatagatcgaatggagatgacagtagtgcgttgggggaaaatgttcggcca
tgtggactttgccaggaagcaaatatggtgcttaagaaaaaccgggatggcaatttcatg
gttggatgctcaggttttccacagtgcaggaatgctgtatggctccctggacctgttcta
gaagccaccataaccaacaatatttgcaactcttgcactccaggtcctgtttacttgatc
caatttaagttccgccagcttgaaataccgccaggcttcaatgtcaaccacttgggttgt
attggtggttgtgatgaaactcttagacagttgatagaaatctgtggaaccggttcccgt
gttcaagcaagaggtcgaccaccaacaacaacacctagcaacggaccacccactacaaca
cccagcaacccccaacgaagtaactctaggcaggcaccttgcatatattgttatcaaaca
gggcatgcttcaactgattgcccttctcggatttcagccactcgacatgtgcagtctcat
ggaatgaaccaacagaatggagaatcttcaattccatgtagcacatgtggaacaccatgt
gttctgcgaacagctaacacagcaaataacaggggaagaaagttctattcatgttcatca
caagcatgcaacttctttgtatgggaggatagcctcaacaacggctctgccccaagaagt
gctcctcgtcaaaatatcagcagctcggcatctaaccctagcaggaggggcggtcgtggg
aggggtgttcagaatgcaggacgtgcaggtgatgtaacgtttgtatcagctacaggtgag
ccgatatcaggaagaagatgcttcgtgtgtggtgatccatcacacttcgcaaatgcttgc
cccagtcgtggttcctga
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