Populus alba (white poplar): 118030996
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Entry
118030996 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118030996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118030996
03009 Ribosome biogenesis [BR:
palz03009
]
118030996
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118030996
Spliceosome [BR:
palz03041
]
Complex A
U1 snRNP components
U1 related factors
118030996
Complex B
118030996
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118030996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
118030996
NCBI-ProteinID:
XP_034891166
LinkDB
All DBs
Position
3:complement(5711015..5718596)
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AA seq
506 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSGSGFGGASSYGGGSTRSSSERREHGRGDSPAKSDLDGLTPF
EKNFHVESPSVAAMSEREVEEYRQRREITVEGRDVPKPVKSFHDVGFPDYVLQEISKAGF
TEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIIHVNAQPFLAPGDGPIVLVLA
PTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES
HHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQSL
YNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGNARFAKELVTILEEAGQKVSPELTAMAR
GAPPPLSGHGGFRDRGRGYSGGRSWN
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagccgatacgacagccgttccggcgacccaacttcttaccgtgaccggagaagtggt
tcaggtttcggcggcgcttccagttatggtggtggctccactcggtcatcatccgagagg
agggagcatggtcgtggtgactcgcctgcgaaatcggatttagatgggctgactccattt
gagaagaatttccatgtggaatccccatcagtggcagcaatgtcagaaagggaggtggag
gagtataggcaacgcagggagattactgtagagggccgtgatgttcccaagcctgttaag
agttttcatgatgtcggctttccagattatgttctgcaagaaatttcaaaagctgggttt
actgaacctacacctattcaagctcaaggatggccaatggctttgaagggccgtgatctc
attggtattgctgaaacaggatctgggaagacacttgcttacctattgcctgcaattatc
catgttaatgcccaaccatttttagctcctggagatggacctatcgtattagttttagct
ccaacacgtgaacttgctgttcagatacaacaagaagcagctaaatttggtgcatcatca
aggattaaaaatacatgcatatatggtggggttccaaagggacctcaagtgcgtgacctc
cagaaaggtgttgaaattgtcattgctacaccgggaaggttgattgatatgatggagtca
catcatacaaatttgcgaagggttacttatctggttctggatgaagcagatcggatgtta
gacatggggtttgagcctcagatacgaaaaattgtttctcagattcgaccagatcgtcaa
actttgtactggagtgcaacttggcctaaagaggttgaacaactggcacggcagtctctt
tacaatccatacaaagtgataataggatctccagatttaaaagctaatcatgcaatacgt
caacatgtggacattgtttcggagaatcagaaatataacaaattggtgaagttgctggaa
gatatcatggatggtagtcgtattctgatttttatggataccaagaaaggttgtgaccag
atcactcgacaacttcgcatggatggttggcctgctctctcaattcatggagataaaagt
caagcagaaagagactgggtcctgtctgagttcaaagctggcaagagtcctataatgact
gcaacagatgtagctgctcgtggattagatgtgaaggatgttaaatatgtgatcaattat
gacttccctgggtctctagaggattatgttcaccgcattggccggacaggaagggcagga
gcaaaaggaacagcttacactttcttcacagctgggaatgccagatttgctaaagaactt
gtcaccatactcgaggaagctggacagaaggtcagtccagaattgacagcaatggctcgt
ggtgcaccgcctccactatctggccatgggggtttccgagatcgtgggaggggttatagt
ggtggccgatcttggaactaa
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