Populus alba (white poplar): 118031236
Help
Entry
118031236 CDS
T07314
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118031236
Spliceosome [BR:
palz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118031236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
NRDE-2
TPR_12
TPR_MalT
TPR_16
Motif
Other DBs
NCBI-GeneID:
118031236
NCBI-ProteinID:
XP_034891479
LinkDB
All DBs
Position
14:complement(21833224..21842179)
Genome browser
AA seq
836 aa
AA seq
DB search
MGDSETVVTEPSAVMDYTAAGYTSTGYADAIANVVPGPGVYTAEGTGNFTASFVAAQAAY
TGNAYGTDSTSVVLDGHVEATHGTEAVVGMDSTTNNAAVAENASIAPPQASGYDSAVNGN
IGTEAGVVVSVENGNAGEVVGGADAVQQFVDGSVPEMSAEEDRLWSIVKANSLDFDAWTA
LIDETEKVAGDKILKIRKVYDAFLGEFPLCYGYWKKYADHEARLGFMDKFVEVYERAVLG
VTYSVDIWLHYCMSAISMYGDPETIRRLFERGLAYVGTDYLSYHLWDKYIEYEEVHAEWG
RVAMIYTRILEIPNRKLDDYFNRFKAFAASRPLSELRTAEEAAAAAAAARTLLEDGGQAD
EGEVHPDAAELPSKPVSAGLGEAEELEKYIAVREEIYKKAKEFDSKISDFENAIRRPYFH
VRPLNVAELENWHNYLDMIEREDDFNKVVKLYERCIIACANYTEYWIRYVLCMEACGNMD
LANNALARATQVFVKRQPEIHLFAARFKEQNGDIPGARAAYQVVHAEIAPGLLEAITKHA
NMEHRVGNLEDAFSLYEQAIAIEKGKEHSQVLPALYAQYARFIYLGSKNVEKAREVLVEA
LENAQFSKPLLEALIHLETFLPQPKRIDYIDSLVDNFILNSSDSVNAASASEREELSCIF
LEFLGIFGDAQSIKKAADRHAKFFLPHSSKSELKKRHAEDYLSSDREKIAKAYSDATSPA
QSLMGAYASAQNQWTAGYGLQPQAWPPATQVQTQQWTPGYNQQAAYGGYGGSYTSPQVPA
SGAQGAAYGAYPPSYPAQQAFPQQSYAQPPAAAAAAALTPVQQPAPVPQPYYGSYY
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgagacagtagtaactgaaccatctgcagttatggattatacagcggct
ggctatacttctactggctatgctgatgccattgcaaatgttgttcctggtcccggcgtt
tacactgcagagggtactgggaatttcactgcttcttttgttgcagcgcaggcagcttat
actggaaatgcatatggtacagattctacttctgttgtgctagatggtcatgtagaggca
acgcatgggacagaggcagttgttggaatggacagtactactaacaatgcagctgtggca
gaaaatgcatctattgcaccacctcaagcttctgggtatgattcagctgtaaatggaaac
atcggtactgaagctggagttgtggtatcagttgagaatggaaatgctggagaggttgtg
ggtggagctgatgctgtgcaacagtttgtggatggttctgtgccagaaatgtcagctgaa
gaagaccggctgtggagcattgtgaaggctaattctttggattttgatgcatggactgcc
ttgatagatgagacggagaaagtggctggggacaagatattgaaaattcgaaaagtgtat
gatgcttttttgggtgaatttccattgtgttatggatattggaagaagtatgcagatcat
gaagcacgccttggttttatggacaaatttgtggaggtctatgaacgggctgttctcggg
gtcacgtactcggtggacatttggttgcactattgcatgtctgccatatccatgtatgga
gatccagagaccattagaaggctttttgagcgaggattagcttatgttggaacagattat
ctgtcttaccacctttgggacaagtacatcgaatatgaagaggtgcatgcagaatggggc
cgtgttgcgatgatttatacacggatattagagattcctaacagaaagctggatgattat
ttcaatagatttaaggcttttgctgcaagtcgacctttatcagaattaaggactgctgag
gaagcagctgctgctgctgctgcagcacgtacacttctggaggatggtggccaagcagac
gagggagaggtccatcctgatgcagctgaactgccttctaaacctgtaagtgctggctta
ggagaagcagaggagttggagaagtatatcgccgttagagaagagatatataagaaagct
aaagagttcgattctaagatctctgactttgaaaatgctattaggaggccctactttcat
gtgcggccccttaatgtcgcagagcttgaaaattggcataactatttggatatgatagaa
agagaggatgacttcaataaggtcgtcaagctatatgaaagatgcataatagcatgtgcc
aattataccgagtattggatacgctatgtcttgtgcatggaagcctgtgggaatatggat
cttgcaaataatgctctcgctcgtgcaactcaagtatttgtcaagagacaaccagagatt
cacctttttgcggcgcgcttcaaagagcaaaatggggatatacctggtgctcgagctgca
taccaagttgtgcatgctgaaattgcccctggtcttcttgaagcaatcactaagcatgca
aacatggagcatcgggtgggtaatcttgaagatgccttctccttatatgaacaggccata
gccattgaaaagggaaaagagcattcacaagtgctgccagcattgtatgcacaatatgcc
cggttcatatatttgggatcaaaaaatgtagagaaagccagagaggttctagtcgaagca
cttgagaatgcccaattttcaaagccacttctcgaggccctgatacatctcgagacattt
ctgccacagccaaaacgaatcgattatattgattcgttggttgataacttcattttgaac
agctcggacagtgtcaatgctgctagtgcttctgagagggaagagctgtcttgcattttc
ttggagtttttaggtatctttggagatgctcaatctataaagaaggctgctgatcggcat
gccaagttcttcttaccccacagtagcaagtcagaattgaaaaagcgccatgcagaggat
tacctttcttcggatagggaaaaaatagccaaagcctactctgatgccacctcgcccgca
cagtctctgatgggggcatacgcaagtgcacaaaatcaatggacagctggttatggccta
cagcctcaagcctggccaccagccacacaagtacagacgcaacagtggactccaggctat
aaccaacaagctgcatatggtggttatggaggcagctatactagtcctcaagttcctgca
tcaggtgcacaaggtgctgcttatggtgcttatcctccttcctatcctgcccagcaggct
ttcccgcaacagagttacgcgcagccaccagcagcagcagcagcagcagcattgactcca
gtgcagcagccagcccctgttccacaaccttactatgggagttactactga
DBGET
integrated database retrieval system
