Populus alba (white poplar): 118031535
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Entry
118031535 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118031535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118031535
03019 Messenger RNA biogenesis [BR:
palz03019
]
118031535
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118031535
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118031535
U7-dependent histone pre-mRNA processing factors
118031535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
MA3
CRM1_C
Motif
Other DBs
NCBI-GeneID:
118031535
NCBI-ProteinID:
XP_034891860
LinkDB
All DBs
Position
11:19838050..19857576
Genome browser
AA seq
1325 aa
AA seq
DB search
MDEALSLLTAANSHGDLTVKLSSLKQAKDVLLSLEPSLAAELFPSLVELQYSPEGIVRQK
LVEVIEEIGLKAMENCSILIPVLLGLLRDNDSVVARESIVSGTHLYCGVLEEMALQCHRR
GKVERWLEGLWIWMLKFKDAVFAIALEPGPVGIKLLALKFLETYILLFTTETTDSDRLVA
EGSRRLFNISWVAGGHPVLDAVSLMSDANKTLVILLDFLWSPGSLPGALMIAVVNCLAAV
ARKRPLHYETILSALLDFDPKVEKGCHAASIQYSLRTAFLGFLRCTYPTILESRDKLLRA
LRAMNAGDAAEQAIRQVDKMIKNNERTSREVRFSRDDQPTSQLPVSGDQLRKRSVPMDNE
EQANGHEMAQKRSRYGPNILSTTPIQINESGPDSVFDNGVSANVHLSDSDLTPAEQMIAM
IGALLAEGERGAESLELLISNIHPDLLADIVITNMKHLPKSSPPLTRLGSLPVTLQDCSS
SSPAQAVAPSAPVSSAQGPIPVVTAGNLSLSDAPIVNNFPVDSKRDPRRDPRRLDPRRTA
TSVGAPSIAIVDDHGGMQPEMDSTVSLSKASPLPVVTSVENPPEPYISNSKIEDKSLEGL
LVSKTDQVSMSEEVICRPEEIVPISEANASSDQAFSPPHTSEEGDVVLKSDFEVASGADT
LYVMEPEQLSPDVSNISVPEEICQVDLPQLPPYVELTEEQQKTVRQLAVERIIESYKHLS
GTECSQTRMALLARLVAQIDADDDVVVMLQKHVLVDYRQHKGQELVLHFLYHLHSLTILD
SVGSASYAAVLYEKFLLVVARSLLDAFPASDKSFSKLLGEVPFLPESAFKLLDDLCHCDI
FDSHGKEVRDGERVTQGLGAVWGLILGRPNNRQAFLDIALKCAVHSQDDIRSKAIRLVAN
KLYQLNYISQNIEQFATNMLLSVVEQHASDIKPSQSVSTDQREGEVVSQEVSVNGSQVSE
TGNCENDSMKGAQPLAQSVSTMSFPEVQRHISLFFALCTKNPGLLQIVFDIYGQAPKTVK
QAVHRHIPVLIRALGSSYSELLRIISDPPEGCENLLMLVLQILTQETTPSANLITTVKHL
YETKLEDATILIPILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPALTPAE
VLVAIHDINPNKDGLPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTV
IQAIDAFPSLVDFVMEILSKLVSRQVWKMPKLWVGFLKCVSQTRPHSFQVLLQLPPPQLE
SALNKHANLRGPLATYASQPSTKTSLPRSTLAILGLVNERHMQQLPISSLHPSSTSSSAH
GANTA
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagcgctctctctcctcaccgcagcgaattctcacggcgatttgaccgttaag
ctatcttctcttaagcaagccaaagatgttttattgtcactcgagccgtcgttggcggct
gagctttttccgtccttagtcgaactgcagtactcgccggagggaatcgtccgacaaaag
cttgtcgaggtaattgaagaaattggtttgaaagcaatggagaattgctcaatactaata
cctgtcttattgggacttttaagagataacgattctgttgttgcaagggagtctattgtt
agtggcacgcatttatattgtggtgttctagaggaaatggcattgcagtgtcaccggcgt
ggtaaggttgaacgatggcttgaaggactatggatatggatgcttaagttcaaggatgct
gtctttgcaattgcattggagcctggacctgttgggataaagttgctggcgttgaaattt
ttggaaacatacatcttgctttttactaccgagaccactgattctgatagacttgttgca
gaaggaagcagacggttattcaacatttcatgggtagctggtgggcatcctgttttggat
gcagtttctctcatgtcagatgccaacaagacacttgtcattcttttggattttttatgg
tcgcctggtagtcttcctggtgcactgatgattgctgttgttaattgtcttgcagctgta
gcgcggaagaggccgcttcattatgagactattctatctgccttgcttgattttgatcca
aaagttgagaagggatgtcatgctgctagtatccagtactctttaagaactgcttttttg
ggattcctgcggtgtacttatccaaccatcttggagtcaagggataaattgttaagggct
ttacgtgcaatgaatgctggggatgctgctgagcaagccatccggcaagttgataaaatg
atcaaaaataatgagcgcacttctcgtgaagtcaggtttagcagggatgatcagccaaca
agccaactgcctgtttcaggagatcagctccggaaaagatctgtgcctatggataatgaa
gagcaagctaatggtcatgaaatggctcaaaagcggagtcgatatggtcctaacattctg
tcaactacgccaatccaaatcaatgaatctggaccggattctgtatttgataatggcgtc
tctgctaatgttcatctatcagatagtgatttgactcctgcagaacaaatgattgctatg
attggtgcattgcttgctgaaggagagaggggtgctgaatcacttgaacttcttatttca
aatattcatcctgatctgcttgctgatattgtcattactaatatgaagcatttgcctaag
tcctcccctcctttaacaaggcttggcagcttgccagtaactctgcaagattgttcttca
agtagtccagcacaggcagtggcaccatcggctccagtttcctctgcacaaggacccatt
ccagtggttactgcaggcaatttatcattgtctgatgcacccattgtcaataatttccct
gtagattcgaaacgtgatccaagaagggatccacgccgcctggatccacgtcgtactgct
acatcagttggagcaccatccattgccattgtggatgaccatggtggaatgcaacctgaa
atggacagcactgtttctttaagcaaggcttctcctcttcctgtggtgacatcagttgag
aatcctccagaaccttatatttcaaacagcaaaattgaggacaagagtttagaaggtcta
ctggtttctaaaactgatcaagtaagcatgagcgaggaggttatctgtagacctgaggaa
attgtccccatctcagaggccaacgcttcttcagatcaagcattttctcctcctcacact
tctgaggagggtgatgttgtattgaagtcagattttgaagtggcatctggtgctgacaca
ttatatgtgatggaacctgagcagctttccccagatgtctcaaacatatctgtgcctgaa
gagatctgtcaagtcgatttacctcagcttcccccatacgttgaactcactgaagaacag
cagaaaactgtgagacagttagcagttgaacggattattgaatcttacaagcatctttct
gggactgaatgcagccagacacgcatggcattactcgcccgattagttgctcagattgat
gcagatgatgatgttgttgtgatgctgcaaaaacatgttttagtggattatcgacaacat
aaggggcaagaacttgtgctgcattttttgtaccatctacactctctaacgattttagat
tctgttggaagtgcttcatatgctgctgttctatatgagaaattccttttggtagtggcc
agatctttgttggatgcttttccagcttcagacaagtcttttagtaaacttctcggtgaa
gttcctttcttgcctgagtctgccttcaaattgttagacgatctctgccactgtgatatt
tttgattcacatggaaaagaagttcgtgatggtgagcgagtaactcagggcctaggtgct
gtatggggtttgattttggggcgtccaaacaaccggcaggcattcctagatatagctttg
aagtgtgctgttcattcacaagatgacattcgatcgaaagctatccggctggtggcaaac
aaactctatcagctaaactacatatcacaaaatattgagcaatttgcaacaaatatgctg
ctttctgttgtggaacagcatgcttcagatatcaaaccttcacagtcagtatccactgat
caaagggaaggagaggtggtaagccaggaagtgtctgtaaatggttctcaagtctcagag
actggaaattgtgaaaatgactccatgaagggtgcacaaccattagcccaaagtgtttcg
accatgtcatttcctgaagtgcaaagacatatttctttattttttgctttatgtacaaag
aaccctggtctccttcaaattgtatttgatatctatggacaagcaccaaaaactgtaaaa
caggctgttcatcgccatattccagttctaataagggccctaggctcatcttattctgag
ctgcttcgaataatatctgatccaccagaaggatgtgaaaatcttttgatgctggtgctg
caaatattgactcaagaaacaacaccttctgctaatctgataaccacggtcaaacattta
tatgaaactaagttagaggatgccacgattcttattccaattttatcttcactttcgaag
aatgaggttttgcctattttccctcggcttgttggacttcctatagaaaaattccagatg
gcacttgctcatattttacagggttcagctcatacgggtccagctttaacaccagcagaa
gtgttggttgccattcatgatattaatcctaataaagatgggcttccactcaaaaagata
acagatgcctgttcagcttgttttgagcaacggacagttttcacacagcaggtcctggcc
aaggcacttaatcagatggtcgatcaaactcctcttcctctactcttcatgagaacagtt
attcaggcaattgatgcttttccttcattggttgattttgttatggaaatactctccaaa
ctcgtgagcagacaggtgtggaaaatgccaaagttgtgggttggcttcttgaaatgtgtc
tctcaaacaaggccacattcttttcaggttttgttgcagctacctcccccgcagcttgaa
agtgctctgaacaagcatgctaacctcagaggccccttggctacttatgccagccaacca
agtacaaaaacttctctacctagatcaactcttgcaattcttggtcttgtaaatgagcgg
cacatgcagcagctaccaatttcatctttgcacccttcaagcacaagttcttcagctcat
ggagcgaacacggcgtga
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