Populus alba (white poplar): 118031873
Help
Entry
118031873 CDS
T07314
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118031873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118031873
03019 Messenger RNA biogenesis [BR:
palz03019
]
118031873
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118031873
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118031873
U7-dependent histone pre-mRNA processing factors
118031873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
118031873
NCBI-ProteinID:
XP_034892266
LinkDB
All DBs
Position
17:11505587..11512852
Genome browser
AA seq
697 aa
AA seq
DB search
MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL
TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIH
STISLGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYIL
SMNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSRQLFDMWCTD
KKNACVLPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKL
AERTPDVGETVSGILVKKGFTYQIMAPGDLHVFSQLSTGNVTQRITIPFSGAFGVIKHRL
EQIYESVESGTDEESGSPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNI
SREVPKVIVESEDIKSEEENEKKAEKVIYALLVSLFGDVKLGENGKLVIRVDENVAELDK
QSGDVESENEGLKERVRTAFRRIQSAVRPIPLPLPAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacagggcaatcacagtcactaaaaagaagggatgcaccggtaacaagagaa
ggaggggatcagctaactctaacccctttaggtgctggaaatgaagtgggtcgatcctgt
gtttacatgtcatttaaaggcaagactgtattgtttgattgtggaattcatccggcttat
tcgggtatggctgctttaccttacttcgatgagattgacccctccactattgatgtactt
ctcgttacacactttcacttggatcatgctgcatccctaccttattttcttgagaagacc
acattcagaggtcgagttttcatgactcatgcgacaaaggctatctacaagttgcttttg
actgattatgtaaaagtgagcaaagtttcagtggaagatatgttgtttgatgagaaagac
ataaaccgctcaatggataaaatcgaggttattgacttccatcagactgtggatgttaat
ggcattaaattttggtgctacactgctggccatgtccttggggctgccatgttcatggta
gatatcgctggtgttcgagtgctgtatactggagactattcacgtgaagaagatcggcat
cttcgtgctgctgagatgccacaattctctccagacatatgcataattgaatctacctat
ggtgtccaactccatcaacctcgacaccttcgggagaagcgcttcactgatgttatccac
tccaccatatctctaggtggtcgtgttctaattccagcatttgcccttggccgagctcaa
gaactccttttgatccttgatgagtattgggcaaaccatcctgagcttcataacatcccc
atatattatgcttctccccttgcaaaaaaatgtatgactgtttaccagacatacatcctt
tctatgaatgaaaggatccgcaatcagtttgcgaattcaaaccccttcaaattcaagcat
atatcaccgttaaatagcattgaagattttactgatgtagggccatctgtggttatggca
agccctggaggactgcagagcgggttgtcaaggcagttgtttgatatgtggtgcactgat
aagaaaaatgcctgtgttttacctggatatgttgttgaagggaccctagctaagacaatc
attaatgaaccgaaggaggtacagctcatgaatggactgactgcaccactcaacatgcag
gtccattacatctcattctctgctcatgcagattatgctcagacaagtacatttttgaaa
gagctcatgcctcctaacatcattcttgttcatggagaagccaatgaaatgggaaggctc
aaacagaaacttatcacagagtttgctgatggcaacaccaagataatcaccccaaagaat
tgccagtctgttgagatgtatttcaactctgaaaaaatggcaaaaaccattggaaagctg
gctgaaaggaccccggatgttggtgaaactgtcagtggtatactggtgaagaagggcttc
acttatcaaatcatggcacctggagatctccatgtcttctcacaactatcaactggaaat
gttactcagaggattaccattcctttttctggtgcattcggtgtgataaagcacaggctt
gagcagatttatgagagtgtggagtctggaactgacgaggagtccgggtctccaacattg
caagtgcatgagctggtaacagtgaaacaagagtctgatagacatatttcacttcattgg
actgctgaccccataagtgatatggtgtctgattcaattgtagctttggttttgaacatc
agccgggaggttcctaaggtaattgtcgagtcagaggacataaaatctgaggaagaaaat
gagaaaaaagcagagaaagtgatttatgccctccttgtttcactttttggagatgtgaaa
cttggagagaacgggaagctggtcatacgcgtcgatgagaatgtggcagagcttgacaaa
cagagtggggatgttgagagtgagaatgaaggtctcaaggaacgagttaggacagcattt
aggcgaattcaaagtgctgtgaggccaatcccgctcccgctccctgcatcttag
DBGET
integrated database retrieval system
