Populus alba (white poplar): 118031885
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Entry
118031885 CDS
T07314
Name
(RefSeq) retrovirus-related Pol polyprotein from transposon RE2
Organism
palz
Populus alba (white poplar)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
HMG_box_2
HMG_box
YL1
CDC45
CHDNT
Sec62
Motif
Other DBs
NCBI-GeneID:
118031885
NCBI-ProteinID:
XP_073261643
LinkDB
All DBs
Position
17:complement(11726548..11733020)
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AA seq
1588 aa
AA seq
DB search
MSVISNSCTMLFLKFSNMYNQPHTFVVVTLDPPIRKGQTLYPHIVLQFDTDFVVQSNLSM
SEDLLYTKYKDKLEPSYKGLIHEVFTTIMRGLSAAKVTRPGKFRSCQDGYAVKSSLKAED
GVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLRRLKTEQEHLFRNI
QRNEYHNLFYFISGKGLKIMNLGEMQTTKGVAAVLQNDGDDAVDPHLAHIMHEAGDDESD
DEDEDFVAGKDDGGSPTDDSGDGESDASESGDEKESSSTSAIPVGSGQSTTLAPNSTHQM
LNHTLPVKFDRSNYVLWRSQIDNVIFANGFEDFIDGTAICPEKELSPGLLNPSFVAWRRQ
DRTILSWIYSSLTPTIMAQIIGKGSSSMIDYIMKVKGAADNLAAIGEPVQEQDQVMNLLA
GLGSDYNAVVTAINIRDDKISIETVHSMLLAFEHRLEQQSSLDHASFMTACYASSSNNRG
GGRKFFGNRGYSQNSNTNNYTNNGRSRGVRYGYTGKQNSTNSDKPQCQLCGKFGHTVHVC
YHRFDISYQNSQNSNTASLNTGSQNNIPAMVASSHNPADDDWYLDSGASHHLAQNEGTLT
NSAPYTGKDKVTVGNGKHLTISNTGSHRLVSHSHSFQLRKVFHVPFILANLISVAKFCSD
NNALIEFRANTFTVKDLHSKKVLAQGRLENGLYRFPVLHRNKKMAYVGTRNLSTIHPHRL
SLVHNKMELWHHRLGHAAADIVTQVMQSCNVSCERNKTTICSSICPSCQMGKSHRLPTSL
SLSRASKPLELIHTDIWGPAMLKSTSRARYFILFLDDYSRYTWFYPLQTKDQALQIFKQF
KLLVENQFDATIKCLQSDNGGEYRTFVTFLQQSGILHRFSCPYTSTQNGRVERKHRHVVE
IGLALLGHASLLMKFWQYAFQSATFLINRMPSKSQVAIQLQCIFLGYNFQNKGYLCLDSL
TERVYVTPHVVFDETKFLHPTPPPLTDSPAEVFTLAILPFSSTLPPNTIPSPPQPPLPFQ
SNNTQFMSSSVSTPISHSGSASIAEDQDTASVPAPRMTTRLMHEPSSLSQALKDSNWIQA
MDVEIAALHKNHTWDLVDQPADINIIGCKWVYKLKYKPDGSIARYKARLVAKGYHQTLGL
DYFETFSPVVKASTIRIILTVAISFQWEIRQLDVHNAFLNGELEELVYMTQPPGYVNPQS
PTKVCKLRKALYGLKQAPRAWFQRLSSTLLQWGFHHSRTDSSMFLHFDASTTLIVLIYVD
DILITGSSSHQISSLITKLDSVFALRDLGQLSYFLGIKVSYLAGSMHLSQTKYTSDLLHR
TAMFHTKSAKTPGAVGQHLSKFDGAPLEEVTQYRSIVGALQYLTITRPDIAFAVNKACQF
MQQPTTAHWLSVKRILRYLKGTLHDGLLLRPSPHLTIEGFTDADWGAQPDDRRSASGYLV
YLGDNLVSWSSTKQKVVSRSSAESEYRGLVLAAAEIIWIQALLQELCVSTPAIPLLWYDN
ISAYHLAKNPVFHARTKHIEIDLHFIRDQVLKGKLQLQFVPTEDQPADLLTKHLTSERFL
FLKSQLCLVPRPFHLRGDDKPSLEETVT
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcatctcaaactcctgtaccatgcttttcttgaagttttcaaacatgtataac
caaccacacacctttgttgttgtgactcttgatccacctatccgcaaagggcaaactctg
tatccacatatcgtgttacagttcgacactgactttgtagttcaaagcaacttgtcaatg
agtgaagatcttttgtacacaaagtacaaggacaagttggaaccatcctataaggggctt
attcatgaagtgttcaccactataatgcgtggattgtctgctgccaaagttactagacca
ggaaaattccgtagttgtcaagatggttatgctgtgaaatcatcattgaaagctgaagat
ggagtcttgtacccactcgaaaagagcttcttcttcttacccaaacctccgacactcatt
cttcacgaggagattgactatgtggaatttgagaggcatgctgctggtggctcaaatatg
cattactttgatcttcttagaagacttaaaacagaacaagagcatctttttcggaacatc
cagaggaatgaatatcataatcttttttacttcataagtgggaagggcttgaaaattatg
aacctgggagaaatgcaaaccacaaaaggagtggctgctgttcttcagaatgatggcgat
gatgctgtcgatccacatcttgcacacattatgcatgaagctggtgatgatgagagtgat
gacgaggatgaagattttgttgctgggaaggatgatggaggttctcctacagatgactct
ggagacggagaatctgatgccagtgaaagtggtgatgagaaagagtcttcgtctacctct
gcaattccagttggctctggacaaagcactacactggcacccaattccactcaccaaatg
ctcaaccatacactgcctgtgaagtttgatcgatcaaactatgtcctgtggagatctcag
attgataatgtcatctttgccaatggttttgaggacttcatcgatggcactgccatctgt
ccagagaaagagttaagcccaggattgcttaatccatcttttgtcgcttggagaagacaa
gatcgaacaattcttagctggatatattcatcacttacaccaactatcatggcacaaatc
attggaaaaggatcttcgtccatgatagattacatcatgaaggttaaaggagctgcagat
aatctagcagccattggagaacctgttcaagaacaagatcaggtaatgaatcttcttgca
ggtcttggttctgactacaatgcagtagtcactgccatcaacattagagatgacaagatc
tctattgaaacagtccatagtatgctactagcgtttgagcatcgacttgagcaacaaagc
tcacttgatcatgcttcttttatgactgcctgttatgcctcctcctctaacaatagaggt
ggtggacgaaaattctttggtaaccgaggatacagtcagaactccaacaccaacaactac
accaacaacggacgtagtcgtggagtcaggtatggttatactgggaaacagaattcaacc
aattctgataagccacagtgtcagttgtgtggcaagtttggtcatactgttcatgtttgt
tatcatcgttttgatatctcgtatcaaaactcacaaaacagtaatactgcttctttgaat
actggaagtcaaaataatataccagccatggttgcatcctcacataatcctgccgatgat
gactggtatctcgactctggagcaagtcaccatctggctcagaatgaaggaactctcacc
aattctgctccttacacaggcaaagacaaagtcacagttggtaatggtaagcatctaacc
atctccaacactggttcccaccggctagtctctcattctcattcttttcaactcagaaaa
gtgtttcatgttccatttatcttagccaacctgataagtgttgctaagttttgctcagac
aataatgccttaattgagtttcgggccaatacttttactgtgaaggacctgcattcgaag
aaggtgctagcacaaggcaggcttgagaatggactctacagatttccagtactgcataga
aacaaaaaaatggcatatgttggcactcgtaatctttccaccattcatccccatagactc
agtctagttcataataaaatggaactttggcatcacaggctaggccacgctgctgcagac
attgtaactcaagtaatgcaaagctgtaatgtttcttgtgaaaggaataaaactaccatc
tgttcttctatttgtccttcttgtcaaatgggcaaaagtcacaggttacctacatctctt
tcactctctcgtgcttccaaacctttggaactaattcacactgatatttggggtcctgcc
atgctcaagtctacgtccagggcaaggtatttcatcctttttcttgatgattattcacga
tatacatggttctaccctctgcaaaccaaggatcaagctctgcaaattttcaaacagttc
aaactccttgtagaaaatcagtttgatgcaactatcaaatgtctccaatctgacaatgga
ggtgagtatcgaacgtttgtgacttttcttcaacagtctggcatcttgcatcgattctct
tgtccttacacttcaactcagaatgggagagtagagaggaagcaccggcatgttgtggaa
attgggttggccctcctaggtcatgcctctttactaatgaagttctggcaatatgctttc
caatcagccacttttctcatcaacaggatgccaagcaagtcacaagttgcaatacagctt
caatgtatctttcttgggtacaacttccaaaacaaaggctatttgtgccttgattctcta
actgaacgtgtatatgttacaccccacgttgtctttgatgaaaccaaatttcttcacccc
acacctcctcctctcacagattcaccagccgaggtcttcacccttgctatattgcccttc
tccagtaccttacctccaaacaccattccctcaccaccacagcctcctttaccttttcaa
agcaacaatacacagtttatgagtagttctgtatctactcctatatctcattctggatct
gcatccattgctgaggatcaggatactgcttctgtcccagctccacgaatgaccaccaga
ttgatgcatgaaccatcatctcttagtcaggccctcaaagattcaaactggattcaagct
atggatgttgagattgctgctctacataaaaaccacacttgggaccttgttgaccagcct
gctgacattaatataatcggttgcaagtgggtgtataagctgaagtacaagcctgatggg
agcatagccagatacaaagccaggcttgtggctaaaggctatcatcaaactcttggactc
gactattttgaaacttttagtccggttgttaaagcatctactattcgtatcatcttaact
gttgccatcagttttcagtgggaaattcgtcaacttgatgttcacaacgcatttctcaat
ggtgagttagaggagctggtttatatgactcaacctccagggtatgtcaatcctcagtct
cccaccaaagtctgtaaattgaggaaagcgttatatggcttgaaacaagctccacgagct
tggtttcaacgacttagctccactcttctacaatggggatttcatcattctagaactgac
agctcaatgtttcttcattttgatgcatctacaacactgatcgtccttatctatgtggat
gatattctcatcacagggagctcttctcatcagatttcttccctcattactaagcttgat
tctgtttttgctttacgagacttggggcagctttcctattttttgggcatcaaagtttct
tatcttgcaggttctatgcatctaagccaaactaagtacacctctgacttactgcatcgc
acagcaatgtttcacaccaaatctgccaaaactcctggcgctgttgggcaacatttgtcc
aagtttgatggtgctcctttggaagaggtcactcagtatcgtagtatagtaggtgctctt
cagtaccttactattactagacccgacattgcttttgctgtgaataaagcctgccagttc
atgcaacaaccaaccacagctcactggctctctgtcaaacgaatccttcgctatctcaaa
ggcacgttgcatgatggcttgttgctccgtccttcacctcatctgacaattgaaggtttc
acagatgcagattggggtgctcaacctgatgatcgccgcagtgcgagtggttatctcgtc
tatttaggggacaatctagtgtcctggtcctccaccaaacaaaaggtagtttctcgcagt
agtgctgaatctgagtatcgcggactggttttagctgctgcagaaatcatatggatacag
gccctcctccaagaactctgtgtttctactcctgctattcctctcctttggtatgataat
atcagtgcttatcacctagcgaagaatcctgttttccatgcacgaacgaagcacattgaa
attgatctccacttcattcgtgatcaagttctcaaaggcaaattacaactgcagtttgtc
cctactgaagaccagccagctgatttactaactaaacacctcacaagtgaaaggttcttg
ttcctcaaatctcaattatgccttgttcccagaccctttcacttgcggggggatgataaa
ccatcactggaagagacggttacgtag
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integrated database retrieval system
