Populus alba (white poplar): 118032215
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Entry
118032215 CDS
T07314
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118032215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118032215
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118032215
mRNA degradation factors
5'-3' decay
Decapping complex
118032215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
118032215
NCBI-ProteinID:
XP_034892723
LinkDB
All DBs
Position
6:complement(111125..120589)
Genome browser
AA seq
1439 aa
AA seq
DB search
MASPGNPHQQGGGGAIGGGGGGGFDMNKLLKPSSANPMSIMQPPNQQQQQQGPSPNSNTI
TTENLTASPSFPLPPSSPPYLTPSSSYPPPTGPYHPYHHPHYLSPYPPPPPFQQLHNQFL
TNTNIHHQNRPQPISSFAPPPPPLSPSNSGGAVLMDILTNQNQQQPPLSTNLSGPLPSYA
SSAVSTATSAPPVPSAPPVSLASPTQQCCTPPVRMLSTKLPKGRHLNGSHVVYDIDVRLQ
GEVQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGHN
QKVTDMAFFAEDVHLLASACVDGCVFIRKINEGPDEEEKPQIFERILLAIHIIADGELVH
PRVCWHPHKQEILVVAIGNLILKIDTNKVGKGTGFSAEQPLTCPVDKLIEGVQLVGKHDG
EVIELSMCQWMTTRLASASTDGAVKIWEDRKAVPLAVFRPHDGNPVNSVAFLTAPDHPDH
IVLITGGPLNQELKIWASASEEGWLLPSNAESWQCNQTLTLKSSVESNAEDAFFDQVVAL
PRAGLFLLANAKKNAIYAVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDSLPNGEHI
VQVYCVQTQAIQQYALNLSQCLPPPLENMELERTESNVSHAFDSDGSTIMESSHGSKPAY
MSAGNIASIPPMTSSSSESAPAANHPEGLGSSDVNSSLDIASSDGQTMATASHNNADNTN
TVPPLLPMSPRLPRKLSGLQSLSNSTDTSLQLSDHAGDQSVPDYLVDRRIETVKDNASDT
SSGDKLSKGEKNVKQTDIAMVSETPIMFKHPTHLITPSEILSRAVSSENSQTTQGLNVAE
AKIQDVLVNNDIESAEVELKVVGETGTDQNNDFDLPRESHTAVAEKKEKSFYSQASDLGI
QMARDCCVEAYSVGPIQQADEGSITEVLDRPPSDEDEKQDMTKDVPAKSGEPETSVEVPE
SPAPTTKAKKRKGKSSQVSVQSSPSPSPFNSTDSSNEPVCSPCAQSSDAALPQILAMQGT
LDQLMNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKVVRANTDALWVRFQEENTKH
EKLERDRIQQLANLITNFINKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISSSIME
SFQKGVGKKAVNQLEKTVSSKLEVTVARQIQSQFQTSGKQALQDALRSTLEASIIPAFEM
SCKVMFDQVDATFQKELSKHINDTQQQFNSMHSPLAITLRDAINSASSLTQTLSGELADG
QQQLLALAAAGASSEVGNPSAKLGNGPLPGLHEMPEAPLDPTKELSRLIAERKYEEAFTV
ALHRNDVTIVSWLCSQVDLQGILSMSPLPPLSQGVLLALLQQLACDITNETSRKLGWMTD
VAAAINPVDPMIAVHVRPIFEQVYQVVINRRSLPSTSASEAPSIRLLLVVINSVLRSCK
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtaatccacatcaacaaggaggcgggggggcaataggaggaggaggc
ggaggaggttttgatatgaataaactgcttaaaccctcttctgcaaatcctatgagtata
atgcaacccccaaaccaacaacaacaacaacagggtccttctcccaatagtaacactatc
accactgagaatctcactgcctctccttccttccctctccctccctcttctccaccttat
ctaactccatcttcttcttatccacctcctactggcccttatcacccttatcaccaccct
cactatctctccccttaccctcctcctccaccttttcagcaacttcacaatcagttcctt
actaatactaatatccatcaccaaaatagaccacagcccatctcttcttttgcacctcct
cctcctcctctctcacctagtaattcaggtggtgctgttttgatggacatcttgaccaat
caaaaccaacagcagccacctctctccactaatcttagtgggcctctcccttcttatgct
tcctccgctgtatccaccgccaccagtgctcctcctgtcccctctgcccctcctgttagt
ttagcatctccgacgcagcaatgctgcactcctccagtgaggatgctcagcaccaagctc
cctaagggccggcatttgaatggaagccatgtcgtgtatgatattgatgtgagattgcaa
ggtgaggtgcagcctcaacttgaagtcactcccatcactaaatatgtctccgatcctggt
cttgttctcggccgtcagattgctgttaataggaattacatctgctatggactcaagcct
ggtgctattcgtatcctcaatattaatactgctttgagatcattgcttcgcggtcataac
cagaaagtaacagacatggctttcttcgccgaggatgttcaccttctggccagtgcatgt
gttgatggatgtgttttcatacggaagatcaatgagggcccagatgaggaagaaaaacct
caaatttttgaaaggatacttcttgccattcacataatagcagatggagaactggtccac
ccacgagtgtgctggcatccacacaaacaagaaattttggttgttgcaattggaaacctc
atcctgaaaatcgataccaataaagttggaaaaggcacgggattttcagctgagcaacct
ctcacttgtcctgttgataagctgattgaaggtgtccagcttgttggtaagcacgacggc
gaagtcattgagttgtcaatgtgtcaatggatgaccacccgtttagcttcagcttcaaca
gatggcgcggtcaagatttgggaagaccgtaaggcagtaccacttgcagtattcagacca
catgatggtaatcctgtaaattctgtggcattcctgactgcccctgaccaccctgatcac
attgttcttatcactgggggcccgctgaatcaggaactgaagatatgggcctctgcaagt
gaggagggctggttgttgcctagtaatgctgaatcatggcagtgcaatcagactttgacc
ttgaagagttcggttgaatctaacgctgaggatgcattctttgatcaagtggtggcgctg
ccccgtgcaggcttatttctgctggcaaatgccaagaagaatgccatatatgctgtacac
ttggaatatggcccttatcctgctgcaacccgcatggattacatagctgagtttacagtt
acgatgcctattttgagtcttactggaactagtgatagtttaccaaatggagaacatatt
gttcaggtttactgtgtgcaaacacaagctattcaacaatatgcattgaacttgtctcaa
tgccttccaccacctctggagaacatggagttggagagaacagaatctaatgtttctcat
gctttcgattctgatggttccactattatggaatcttctcatggaagtaaacctgcttat
atgtccgcaggtaacattgcttccattccaccaatgacttcaagcagttctgaaagtgct
cctgcagcaaatcatccagaaggcttaggttcttctgatgttaatagctcactagatata
gcttcttctgatgggcaaaccatggctactgcatcacataataacgctgacaataccaac
actgtaccaccccttctaccaatgagtccaaggttgcctcgaaagttgtctggtctccag
agcctgtcaaatagcacagatactagtttgcagctcagtgatcatgctggtgaccagtct
gttccagattatttggtggaccgcagaattgaaactgtgaaggataatgcaagtgataca
tcctctggtgataaattgagtaagggtgagaagaatgtcaaacaaactgatattgcaatg
gtttctgaaactccaataatgtttaaacacccaactcatcttataactccatcggagata
ttatccagggccgtttcttctgaaaattctcaaaccactcagggcctgaatgtcgcagag
gcaaagattcaggatgtgcttgtgaacaatgatattgaaagtgctgaagtggagcttaaa
gttgttggagagacaggaactgatcaaaataatgactttgacttgcccagagaatctcac
actgctgttgcagagaagaaagagaaatccttctactctcaggcctcagatcttggcatt
cagatggcaagagattgttgtgtggaagcttatagtgttgggccaatccaacaagctgat
gaaggtagtattactgaggtacttgatagacctcctagtgatgaagatgagaagcaagat
atgactaaagatgtgcctgcaaaaagtggtgaaccagaaacttctgtggaagttccagag
tccccagcccctacaactaaagcaaaaaaacgaaaagggaaaagttcgcaagtatccgtt
caatcttccccttccccgagtccattcaactctaccgattcatccaacgaaccagtttgc
agtccctgtgcccaatctagtgatgctgctttacctcagatattggccatgcagggtaca
cttgatcagttaatgaacatgcagaaagaaatgcagaagcagatgaatacaatgatttct
gtcccagtttccaaagaaggtaaaagacttgaggcatcattgggccggagcattgagaaa
gttgttagggctaacacagatgctctatgggttcgttttcaagaagaaaacactaagcat
gagaaattagaaagggaccgaatacagcagttagcaaatttgataacaaattttataaac
aaggatttgccaacagctttggagaaaactttaaagaaggaaatagctgcaattggacct
gctgttgctcgtgctatcactcccattttggagaaaagcatatcatcatctattatggag
tcattccagaaaggggtgggaaagaaggcagtgaatcagctagagaagacagttagttca
aagcttgaagttacagtggccaggcaaatccaatcacagtttcaaacttctggcaagcaa
gctcttcaggatgcattaaggtctactctagaagcctcaattattcctgcgtttgagatg
tcctgcaaagttatgtttgatcaagttgatgccacatttcagaaagagcttagtaagcat
ataaatgacactcagcaacagttcaattccatgcattctcctttggccatcactctgagg
gatgctatcaattcagcatcatcactcactcaaaccttaagtggagagctggctgatggc
caacagcagctcttagctttggcagctgcaggtgcaagctcagaagtaggaaatccttca
gcaaagttgggcaatggaccattgcctggtttgcatgagatgcccgaggcacctttggat
ccaacaaaagaattatcaaggttaatagctgagcggaagtatgaggaggcattcactgta
gctctgcacagaaatgatgtcacaatagtttcctggttatgttctcaggttgatctacaa
gggattttgtccatgtcaccgctcccacctctaagccaaggagttctgctggcccttcta
cagcaattggcatgtgatattactaacgaaacctctagaaagttgggatggatgacagat
gtggctgctgctataaaccctgtcgatccaatgattgcagtgcatgtaagaccaatcttt
gaacaggtttaccaggtagttatcaatcgaaggagtctacctagtacttctgcttcagaa
gccccaagcatacgccttcttctggttgtcataaattctgtgctaaggagctgtaaatga
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