Populus alba (white poplar): 118032297
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Entry
118032297 CDS
T07314
Name
(RefSeq) uncharacterized protein
KO
K12385
Niemann-Pick C1 protein
Organism
palz
Populus alba (white poplar)
Pathway
palz04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
118032297
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
118032297
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
palz02000
]
118032297
Transporters [BR:
palz02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
118032297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
Motif
Other DBs
NCBI-GeneID:
118032297
NCBI-ProteinID:
XP_034892857
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Position
9:complement(12949630..12963438)
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AA seq
1252 aa
AA seq
DB search
MAMLFLLLLFSSSLISGFTYGAKHEKEYCAMYDICGARSDGKVLNCPFPTSSVKPDDYFS
AKIQSLCPAISGNVCCTETQFDTLRAQVQQAIPLLVGCPACLRNFLNLFCELSCSPNQSL
FINVTSTSEVNGNLTVDGIAYYVTDDFGERLYDSCKDVKFGTMNTRAIDFVGGGANNFKE
WFAFIGQKAPPGFPGSPYEIDFKSTIPDSSKMVPMNVSAYTCGDTSLGCSCGDCPLAPAC
SSSEPPSPPKKESCMVRIGPLKVKCLDFSVAILYIILVFAFLGWASLNRKRERRAAASKE
PLLSSMDEVEADSTEIQKDGKVPRLINRFQLDGVQGHMSSFYRNYGKWVARNPTLVLCSS
VAVVLVLCIGLICFKVETRPEKLWVGPGSKAAEEKHFFDSHLAPFYRIEQLILATLPDSK
NDKRHSIVTDENIQLLFEIQKKVDGIRADYSGSVVSLTDICLKPLGDDCATQSLLQYFKM
DPENYDDYGGVEHAEYCFQHYTTADTCMSAFKAPLDPSTALGGFSGNNYSEASAFVVTYP
VNNAIDEAGNGKSVAWEKAFIRLVEEELLPMVQSSNLTLSYSSESSIEEELKRESTADII
TIAVSYVVMFAYVSVTLGDASRLSTFFLSSKVLLGLSGVVLVMLSVLGSVGFFSAVGVKS
TLIIMEVIPFLVLAVGVDNMCILVHAVKRQSIELPIEERISNALHEVGPSITLASLSEIL
AFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIAFDCRRAEDNRIDCFPCIKVP
SPGGSNEGINQRRPGLLARYMKEVHAPILGLWAVKIVVIAIFVAFALASVALCPRIESGL
EQQVVLPRDSYLQGYFNNISEYLRIGPPLYFVVKDYNYSLESRHTNQLCSISQCDSNSLL
NEVSRASLVPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFMNGTYCPPDDQPPCCSPDE
FSCGYGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWFLDALPSSDCAKGGHGAYTSSVD
LNGYKNGVIRASEFRTYHTPVNKQGDYVNALRAAREFSSRISDSLKIEIFPYSVFYIFFE
QYLDIWRIALINIAIALGAIFIVCLVITSSFWCSAIILLVLVMIVVDLMGVMAILDIQLN
AVSVVNLIMSIGIAVEFCVHIAHAFLVSHGDRGQRAKEALSTMGASVFSGITLTKLVGVI
VLFFARSEVFVVYYFQMYLALVIIGFLHGLVFLPVVLSVFGPPPRHVIMETR
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgctctttctgcttctcttgttctcttcttctctgatttctggtttcacttac
ggtgcaaagcatgagaaagagtactgtgccatgtatgatatctgtggagcacgcagtgat
ggcaaagttctcaattgcccctttcctacctcttctgtcaagcctgatgactatttctct
gctaagattcaaagcttgtgtcctgcaattagtggaaatgtttgttgtactgagactcaa
tttgacactttgcgagctcaggtccaacaagcaattcctttgcttgtgggctgtccagct
tgcttgaggaacttcttaaatcttttttgtgagctatcttgttcacccaatcaaagtctt
ttcatcaatgtcacttctacctctgaggtcaatggcaatctcactgtggatggtattgcc
tattatgtaaccgatgattttggagaaaggctctatgactcctgcaaggatgtaaaattt
gggactatgaatacacgagcaatagattttgttggtggtggtgccaataattttaaagaa
tggtttgcatttattggtcagaaggcaccccctgggtttcctggttcaccttatgaaatt
gattttaagtcaactattcctgattcatcaaaaatggtccctatgaatgtctctgcttat
acatgtggagacacttcactgggatgctcttgtggtgattgccctttagctccagcgtgc
tctagttcagagccaccttctccgcccaagaaagaatcctgtatggttagaattgggcct
ctcaaggttaaatgtcttgatttctctgtagcaatcttgtacatcatattggtttttgca
tttttgggatgggcttctcttaatcggaaaagagaaagaagagctgcagccagcaaagaa
ccattgttgagttcgatggatgaggttgaagctgattctactgaaatccaaaaggatgga
aaggtgcctcggttgataaataggttccaactagatggtgttcaaggacatatgtcaagc
ttttacaggaattatggaaaatgggttgctagaaatcctactcttgtcctctgctcatca
gtggcagttgttcttgtgctttgtataggattaatctgttttaaggtggagacccggccc
gagaagttgtgggtaggtcctgggagcaaggcagcagaagagaaacatttttttgacagc
caccttgcccccttctacagaattgaacagcttatattagcaaccttgccagattcgaag
aatgacaagagacacagtattgtcacagatgaaaatatccagttactatttgaaatacag
aagaaggttgatggaattcgtgcagattattcaggctcagttgtatctctgacagacatt
tgcttgaagcctcttggcgatgattgtgccactcaaagcttgctacagtattttaaaatg
gaccctgaaaattatgatgactatggaggagtggaacatgccgagtattgctttcagcat
tatactactgcagacacttgtatgagtgcatttaaagcccctcttgaccctagcactgct
ttaggaggattttctgggaacaactattctgaggcatctgcatttgtcgttacctaccca
gttaataatgcaattgatgaagcaggcaatggaaagtctgtggcatgggaaaaagctttc
attcggttagtggaggaagagctgctgcccatggtgcagtctagcaatcttacactttcg
tactcgagcgaaagctcaattgaggaagaattgaaaagagaaagtactgcagatattata
actatagcagtgagctatgttgtaatgtttgcttatgtttctgtgacattgggggatgca
tcacgcttgtctaccttctttctctcatccaaggtattgcttggtctttcaggagttgtt
cttgttatgctttctgtccttggatctgttggatttttcagtgcagttggagtcaaatct
acattaataataatggaagtcattccgttcctggttttggcggttggagtggataacatg
tgtatattggtgcatgctgtgaagcgccaatcaattgagttacctatagaggagagaata
agtaatgcactgcatgaagttggcccatcaattacacttgctagtttgtctgagattctg
gcatttgctgttggaagttttattcctatgccagcatgccgtgttttctccatgtttgca
gctttggctgttctattggactttcttcttcaagtcacagcttttgttgcactgattgca
tttgactgtcggagagctgaggataacaggattgactgtttcccgtgcatcaaagttcca
tcacctggaggatctaatgaaggcattaatcaaagaagacctggacttttggccagatat
atgaaggaagttcatgcacccattcttggactttgggctgtaaaaatagtagtcattgct
atctttgttgcatttgcattggcaagtgtggcactatgtcctaggattgagtctggtttg
gagcaacaagtggttcttccccgtgattcctaccttcagggttatttcaataatatctcc
gaatatctgagaattggaccacccttgtattttgttgttaaagattacaactatagcttg
gaatcaaggcatacaaaccagttatgctccatcagccagtgtgattcaaactcccttttg
aatgaggtatcgagggcatctttagttccagaatcaagctacatagccaagcctgctgct
tcatggcttgatgactttcttgtttggttatcaccagaggcctttggttgttgtcgtaag
ttcatgaatggtacttattgcccaccagatgatcagcctccttgctgctcacctgatgaa
ttttcttgtggctatggtggagtttgcaaagactgcacaacgtgctttcggcattcagat
ttggttaatgatcgaccatctacagtgcaatttagagagaaacttccatggttcctcgat
gctctgccatcttctgattgtgcaaagggtggtcatggggcttataccagcagtgtggat
ctaaatggttacaagaatggtgttataagagcttcagagttccgtacatatcacacgccg
gttaacaaacaaggggactatgtcaatgctctacgagctgcaagggaattcagttcaaga
atttctgattccttgaagattgaaatctttccatattctgtgttctacattttctttgag
cagtacctggacatttggaggatagctttgatcaacattgctatagcacttggtgctata
tttattgtatgtctggtcattacttccagtttttggtgttcagcaatcattctacttgtt
ttggtgatgattgttgtggatttaatgggtgtgatggcaattttggatattcaactaaat
gcagtttctgttgtcaaccttataatgtcaattggaattgccgttgagttttgtgtgcat
atagcacatgcattcttggtgagccatggtgataggggccagagggcaaaagaggctctg
agcacaatgggagcttccgtcttcagtggaattacactcacaaagcttgttggagtgatt
gtccttttctttgcgagatctgaagtgtttgtggtttattacttccaaatgtacctggca
ttggttattataggtttcttgcatggactggtgttcctcccagtggtgctgagcgtgttc
ggtccgccaccaagacatgtcatcatggaaacaagatga
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